Solanum stenotomum: 125843136
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Entry
125843136 CDS
T08385
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125843136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125843136
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125843136
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-GeneID:
125843136
NCBI-ProteinID:
XP_049378316
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Position
10:complement(51612910..51615765)
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AA seq
889 aa
AA seq
DB search
MDSGDGSVSRWFCRNCKRPITKTGYTACECGCKTWVDDGTNEKWLVVDIPLGSPPVTVEG
ENNKGPILLSDDGESKQDCEVVENIGEDGRKRRMMEPSGGDKRRKFISGTCEEISDNSEE
ESDPDVAIVPQLVAESENHNKGRTYFLRPRSMDKSKNKNDEESDEEESDDEEESDYEECK
SSYKEDCDDHNKLTPPEEKEHVSVKETLPLVFRFEDEEPLPPGKEEWEIENDNLFAEMRM
CMLEERIRLTNSPVLQMQSEKVSDCQMGNHKLKLDEQIGLICSVCSHVILEIKYIFPDFA
RRPRQRHRRKYLRESPSLLDVESFRASDSSADQDSAIYEEGTVWDLVSPNVKAAMYPHQR
GGFEFMWEHIAGAITLERLREPLSKSKGGCIISHPPGTGKTRLTIVFLQSYLKMFPKSRP
VIIAPSSLLLNWEAEFQKWEVDIPFYNLNSKDFSSQEEEATIRVVGCLSDAGRKNTQLIR
LVKLKSWAESKSVLGISYDLLRNLTGEDGDGNAKGIREMLLKLPGLLVLEEGHTARNEHS
LVWKALKKVETEKRILLSGTPFQNNVKEFYNTLSIVCPKFAADSEQKWASLSSSIDNNPR
ALEELRDIIAPLVHTCSEDVKKVSLPGLKSTVIHLKPTDLQKELLKRIPENPGSLSNLSS
LISVHPSLVANRKEFSDLESQLSERRYRLDPDIGVKTKFVVELVKLCDGPKERVIIFSQL
LGPLKLIKEQLSSLFGWTLDREILYMDGQLDVKQRQLSINSLNDPKSDVKVLLASIKACS
EGISLIGASRVVLLDVLWNPSVEQQAISRAYRKGQTKFVHVYYPVTSKWEVDKIEQQTRK
SYQSDVLLSRNEIKMDPSCSVSEDNILESMVKNEGLRHIFEDLSHAPSS
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatggctctgtttcaagatggttttgtcgaaattgtaaacgtcccatt
accaaaacgggatacacagcttgtgaatgtgggtgtaaaacatgggtggacgatgggact
aacgagaaatggctcgtcgtggatatcccattggggagtcctccagttactgttgagggt
gaaaacaacaaaggtccgattcttcttagtgatgacggggagtctaaacaggactgtgaa
gttgtggagaatattggagaggatggaaggaaaagaagaatgatggagccttctggaggt
gacaagaggaggaagttcatttccggaacttgtgaggaaatatctgataattcggaggag
gagagtgatcctgatgtagctattgtacctcaacttgttgctgagagtgaaaaccacaac
aaaggccgaacatattttcttcggccacgctctatggacaagtctaagaataagaatgat
gaggagtctgatgaggaggaatctgatgatgaggaggagtctgattacgaagagtgtaaa
tcctcgtataaagaggactgtgatgatcataataaactcactcctcctgaagagaaggaa
catgtttctgtcaaagaaacacttcctttagtatttcgatttgaagacgaggaacctctt
cccccagggaaagaagaatgggaaatagaaaacgacaatctttttgctgaaatgcgcatg
tgtatgttggaagaacgaataagacttacaaattcacctgttttgcagatgcagagtgaa
aaagtaagtgactgtcagatggggaaccacaagcttaagctagatgaacaaattggactc
atctgttcagtttgttcacatgtgattttggaaatcaagtacatctttcctgattttgct
agaagacctcgacaaaggcatagaagaaaatatctcagagagtcgccatcactgttggat
gttgagagcttcagagcttctgattcttctgcagaccaagattctgctatttatgaagaa
ggaacagtgtgggatttagtttccccaaatgttaaagcggcaatgtatcctcatcaacgt
ggaggatttgagtttatgtgggaacacattgctggagctataacacttgagaggctgaga
gagcccctatctaagagtaaggggggatgcattatctcacacccacctggcaccggaaaa
acccgactcaccatagtgtttcttcagtcatatctgaagatgtttccgaagagtcggcct
gtaatcatagctccatcaagtttgcttcttaactgggaagccgagttccagaaatgggag
gtggacattcccttctacaatttgaacagtaaagatttctcctcccaagaagaagaagct
acaattcgtgtcgttggctgtttatctgatgcaggaagaaaaaatacacagcttatacgt
ttggtgaagctgaaatcctgggctgaaagtaagagtgttttgggaatcagttatgacttg
ctcaggaacctcacaggagaagatggagacggcaatgccaaagggatacgagaaatgctt
ctcaaattacctggtcttctggtccttgaagaagggcacactgctcggaatgagcacagc
cttgtgtggaaagcactgaaaaaggttgaaacagaaaagcggatacttctgtctggaact
ccgttccagaataacgtcaaagaattttacaacactctcagcatagtttgtccaaagttt
gctgcagattcggagcagaaatgggcttctctaagcagttccattgacaataatccccga
gcattggaagagcttagggatattattgcaccacttgtgcatacgtgcagtgaagatgta
aagaaggtaagccttccgggtttaaagagtacagtgatacacttgaagcccacagatttg
cagaaggagttgcttaaaagaataccagagaatccgggctccctttccaatctgtcgtct
ctgatctctgttcatccttcattagtggcaaacaggaaggagttctctgatttagaaagt
cagctcagtgaaagaagatatcggttggatcctgatattggagtaaaaactaagtttgtt
gttgaattagtcaaactatgcgatgggccgaaggagagggttataatatttagccaatta
cttggtcctctaaagctgatcaaggagcaactcagttctctctttggctggactttagac
cgggagattctatatatggatggccaacttgatgtaaagcagcggcagctatcaataaat
tctcttaatgatcctaagagtgatgtcaaagtacttcttgcatcaataaaagcatgttcg
gaaggaataagtcttataggggcatcaagagtggttttgcttgacgttctctggaatccc
tcggtagaacagcaagctatcagtcgagcctacaggaaaggtcagactaaatttgtgcat
gtttactatccagtaacatcaaaatgggaggttgacaagatcgaacaacagacgagaaaa
agctatcagtcagatgtactattgtctaggaatgaaatcaagatggatccttcatgttct
gtgtcagaggataacatactagaatccatggttaagaatgagggcctccgacatattttt
gaagacctatctcatgcaccgagcagttaa
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