Solanum stenotomum: 125843550
Help
Entry
125843550 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125843550 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125843550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125843550
03041 Spliceosome [BR:
sstn03041
]
125843550
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125843550
Spliceosome [BR:
sstn03041
]
Complex B
Other components
Prp19-related factors
125843550
Complex C
125843550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
125843550
NCBI-ProteinID:
XP_049378630
LinkDB
All DBs
Position
1:21453902..21505812
Genome browser
AA seq
917 aa
AA seq
DB search
MSIPRELYPTEDDLPYEEEILRNPFSLKQWWRYLVARADAPFTKRRVLYERALQALPGSY
KIWHAYLRERLELVRNLPINHSLYQALNNTFERALVTMHKMPRIWIMYLVSLTQQKLVTR
TRRTFDRALCALPVTQHDRIWEHYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDLLEFL
LNSELWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSDSEVEDEGSNGEVGAEEDVDEEDDRLNVAKLEKKLKEFWLNDDKDIDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTIDPMKAVGK
PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL
ELMRRATAEPTVEVKRRVAADGNEPVQIKLHKSLRLWLLFVDLEESLGSLESTRVVYERI
LDLRIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEQTPADAVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPANEKLS
MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARALYK
HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD
QMQTLEEAKDVLKKAGVADDEMAALERQLAPPENDTKSKEQSRVVGFVSAGVVESNGQKV
TANNEDIELPEESDSEEDDYKVEIALKEAPDAVFGGLIRKRDNEGDEAEDDSTAKNKDSD
GPLGALERIKRRKQQAS
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcccgagggagctctaccccaccgaagatgacctcccgtacgaggaagagatc
ctcagaaatccgttcagtttgaagcagtggtggcgctatctagtggcacgagcagatgcg
ccattcacaaaacgaagagtgctttacgaacgagctctacaagctctccccggaagctac
aaaatatggcacgcgtatctccgcgaacgtctggagttagttcggaatcttccaatcaac
cactccctgtaccaagctctaaacaacactttcgagagagcacttgttacaatgcacaaa
atgccacgaatttggatcatgtacttggtgagtttaactcaacagaagctcgttactcga
actagacgcacttttgatagagcattgtgtgcattacctgttactcagcatgataggatt
tgggaacattatttagtgtttgttagtcaaaggggaattcctattgaaacatcacttagg
gtttataggaggtacttgaagtatgacccttcccatattgaggatttgcttgagtttttg
ttgaattctgagctgtggcaggaggcggcagagaggttagctggtgtattaaatgatgat
cggttttattctattaaagggaagactaaacataggctttggttggagctgtgtgacttg
ttaacacagcatgctactgaaatatcaggtttgaatgtggatgcgataattagaggaggg
attaagaagtttaccgatgaggttgggaggctttggacgtcgttggcggattattacatt
aggaggaagttggttgagaaggcgagagatattttcgaagaagggatgacaactgtggtg
actgttagggattttagtgttatctttgatgcgtactcccagtttgaggagagtatgctt
gccttgaaaatggaggagatgagtgatagtgaggtggaggatgaagggagtaacggtgag
gttggggcagaggaagatgtagatgaggaggatgataggttgaatgtggcaaaattggag
aagaagcttaaagagttttggctaaatgatgataaggatattgacttgagattagcgagg
ctagaacatcttatggataggaggccagagcttgcgaatagtgtccttttgaggcaaaat
ccgcataatgtagaacagtggcatagaagggtaaaactattcgaagggaatccgacaaag
caaatattaacgttcactgaggcagttagaactattgacccaatgaaagctgtggggaag
ccacatactttgtgggttgcatttgcaaaactttatgaaaaccacaaggatattgcaaat
gcaagagtcatctttgataaggcagtgcaggtgaattataaaactgttgatcatctggct
agtgtttggtgtgaatgggctgagatggaactacgtcacaggaatttcaagggtgctcta
gaactgatgagacgtgccactgctgaaccaactgttgaggtcaaacggagagttgctgct
gatggaaatgaaccagtgcaaattaagctacacaaatctctaaggctttggttactgttt
gtggatttggaggagagtctaggaagcttagagtcaactcgtgtggtctatgagcgaatt
ttggatctgagaattgctacaccacagattataataaattatgcagtacttctggaggat
cacaagtactttgaggatgcattcaaggtttacgagaggggtgtgaagatcttcaagtac
ccacatgttaaggatatatgggttacctatctttccaaatttgtgaagagatatgggaag
tcaaagttggaacgagctagagagttatttgagcatgctgttgaacagacccctgctgat
gctgtgaagccattgtatcttcaatatgctaaattagaggaagactatggtcttgcgaag
cgggctatgagggtttatgatcaagctacaaaagctgttccagcaaatgagaaattgagc
atgtacgagatctatatagctcgtgcagctgagatatttggtgttccaagaacacgggag
atatatgaacaagcaattgagtctgggcttccagacaaggacgtgaaagttatgtgctta
aagtatgcggaacttgagaagagcctaggagagattgatcgtgctcgtgcactatacaag
cactcatcacaattcgcagaccctagatctgatcctgatttctggaacaagtggcatgag
tttgaggtgcagcatggtaacgaggataccttccgtgagatgctccgtgtaaagaggagt
gtatctgcaagctacagccagacacattttatcctgccggagtatctcatgcaaaaggat
cagatgcagacccttgaggaagcaaaggacgttttgaaaaaagctggtgttgctgatgat
gagatggcagctcttgagaggcagttagcgccccctgaaaatgatacaaagagcaaagaa
cagagtcgggtagttggatttgttagtgcaggagtagttgagtcaaatggacagaaagtc
actgcaaacaatgaggatattgagctacctgaggaaagtgattctgaagaggatgattat
aaggttgaaattgcactgaaagaagcccctgatgcagtgtttggaggtctaatccgtaag
agggacaacgaaggtgatgaagcagaagacgactctactgccaagaataaagatagtgat
ggccctcttggtgcgctagaaagaataaaacgaaggaaacaacaagcatcttag
DBGET
integrated database retrieval system
