Solanum stenotomum: 125843779
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Entry
125843779 CDS
T08385
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125843779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125843779
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125843779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
125843779
NCBI-ProteinID:
XP_049378934
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Position
11:complement(56559668..56563572)
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AA seq
465 aa
AA seq
DB search
MEMEPGKLFVGGISWDTNEDRLKEYFQAFGDVIEAVIMKDRITGRARGFGFVVFADPSVA
ERVVKEKHIIDGRTVEAKKAVPRDDQHITRNNGSMQGSPGPARTKKIFVGGLASSVTESD
FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDKVLYKTFHELNGKLVEVKRA
VPKELSPSPARSPFNGQTYGLNRVNNLLNAYTQGYVPSSIGNYGMRMEGRYSPLTAGRNG
YSSFNPADFNLPTGIDSTLNLNYGGNGTFGSNYGRGFNSLYNGNSNRFSGPVGFPPGRVA
SSSMLNSVGWNLWDNESLNYGTNSANSTDFVGSGSGTAGYGTLGGLGTIWGSSSISGQGG
GNGSFGSGNIANSGEAVGTGYGRNSGSNAVNTSPYSSAKDIPAGAFGNLYGNTVGASFYE
DSAWCSTSPELDDSASFGYGLGNAESLGYVGGYSVANRSNKGIAA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagcctggaaaattgtttgttggtggaatttcttgggacactaatgaagat
cgtctcaaagaatatttccaagcttttggtgatgtgattgaagctgtgatcatgaaagat
cggatcactggtcgtgctcgtggttttggttttgttgtttttgcagacccttctgttgcc
gaaagagttgtgaaggaaaaacacataattgatggtagaactgtagaggcaaagaaggct
gttccgagagatgatcaacacattaccagaaacaatggtagtatgcagggttctccaggt
ccagctcgcactaaaaagatttttgttggaggtttggcatcctcagtcactgagagtgac
ttcaagaattactttgatcaatttgggacaatcacagatgttgtagtgatgtatgatcac
aacacacaaaggcctagaggatttggatttatcacttttgactcagaagaggcagttgat
aaagttctatacaaaacatttcatgaacttaacggtaaattggttgaggttaagcgtgca
gtacccaaagagctgtcacctagtccagcccgaagcccatttaatggacagacctatggt
cttaacagggttaacaatttgcttaatgcatatacccaaggttacgttccaagctcgatt
ggaaattacggaatgagaatggaaggtagatacagtcctcttactgctggtcgaaatgga
tattcatcctttaatcctgctgactttaacttaccaacaggcatagactccacattgaac
ctaaactatggtggaaatggaacttttggttctaattatggacgtggattcaattcctta
tacaatgggaattcaaacaggttcagtggtcctgtcgggtttccccctggaagggttgca
agcagttcaatgttgaattcagtaggatggaacctgtgggacaatgagagtcttaattat
ggaacaaattctgccaactctactgattttgttggttctggaagtgggactgcgggatac
ggtacgttggggggtctcggaacaatctggggttcctcttcaatttcgggtcaaggtgga
ggaaatggttcttttggaagtggcaacattgctaacagtggcgaagcagttgggacaggg
tatggacgaaactcaggaagcaatgctgtcaatacatcaccttattcctcagcaaaagac
attcctgctggagcttttgggaacttgtatggtaatactgtaggtgcttcgttctatgag
gactcagcctggtgttcaacatctccagaactagatgactctgcatcctttggttatgga
cttgggaacgcagagtcacttggttatgttggtggttatagtgttgcaaatagatcaaat
aaaggaattgctgcctag
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