Solanum stenotomum: 125843801
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Entry
125843801 CDS
T08385
Name
(RefSeq) RNA-binding protein Y14A
KO
K12876
RNA-binding protein 8A
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125843801
09122 Translation
03013 Nucleocytoplasmic transport
125843801
03015 mRNA surveillance pathway
125843801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125843801
03041 Spliceosome [BR:
sstn03041
]
125843801
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125843801
Spliceosome [BR:
sstn03041
]
Complex C
Other components
EJC/TREX
125843801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
125843801
NCBI-ProteinID:
XP_049378964
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All DBs
Position
11:46130461..46137113
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AA seq
195 aa
AA seq
DB search
MANAEVEAVDFEPEEDDLMDEDVDASSSPRATIPKLKSAITGGSSSAPKKTKGRGFREEA
AESDRNARMSARFDSLDSEGGPGPERSIEGWIVLVTGVNEETQEDDLHNDFGEFGEIKNL
HLNLDRRTGFVKGYAFIEYESFEEAQRAISEKDGAEFLTQTIHVDWAFSRGPFKRRNARR
RSPHGHRSRSPRRRF
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgcagaggtggaggcggtggactttgaaccagaggaggacgatctgatggac
gaggacgtggatgcctcgtcgtctcctagggctacaattcctaagctcaaatctgccatt
actggaggctcatcctctgctcctaagaagaccaagggacgtggttttcgtgaagaagct
gctgagtctgaccgtaatgcccgcatgtctgcccgctttgattctctcgattctgaaggt
ggtcctggtcctgaacgatccattgaaggatggattgttttagttactggggttaatgaa
gagacacaagaagatgatcttcataatgatttcggtgagtttggagaaatcaagaatttg
catttgaatctggatcgtcggactggatttgtgaagggatatgcattcatagaatatgag
agctttgaagaagcacaaagagctataagtgagaaggatggagctgagtttctcacacag
actatacatgttgattgggcattcagcaggggtcctttcaagaggaggaatgctaggagg
agatcgccacatggccatcgttctagaagtcccaggcggagattctaa
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