Solanum stenotomum: 125843917
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Entry
125843917 CDS
T08385
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
125843917
Enzymes [BR:
sstn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
125843917
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Motif
Pfam:
CBM-like
Rhamnogal_lyase
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
125843917
NCBI-ProteinID:
XP_049379097
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Position
11:complement(55390517..55396154)
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AA seq
573 aa
AA seq
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IQNYKSIFRVKSRFLGNSFEVIMDTENQAEISFKSTWNASQSDELPLNSDLRFVMLRDTP
GFYTYAIVERLEGLPLVYIENLRVVFKLQQDMFHYMAISDERQRIMPMPVDRETGKVLDY
KEAVLLTNPTNPNLKGEVDDKYFYATDNKDDRVHGWVSSTINPPVGFWMIIPNDEFRTGG
PYKQDLTSHVGPTVLSIFVSRHFAGDDLVIKFQQGEPWKKVIGPVFLYLNSNSSAMDNPT
ILWDDAKRKMNQEVASWPYDFPVSEEYIKSNQRGMVRGQLLVNDSTTTLVPSSNGYIGLA
SPGDVGSWQRENKDYQFWTKTDAMGNFTIENVISGTYNLYAIAPGIIGDYKYTFDVQVTP
GSSIELGSLVYNPPRNGATLWEIGVPDRTAAEFFVPTPPPEFNVHVYQNNFELIFRQYGL
WEQYSVLYPENDLVYNVGTSNYSKDWFFAHVTRNIGNKTYISTTWKIIFNLENVDNASNY
TLQMALAAAQRAELQVRFNDEKVVEPHFTTGKIGGDNAIARHGIHGLYFLYSIEVKGNLL
VEGTNIIFLTQAIATNPLQGVMYDYLRLEGPHQ
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atccaaaattataagtccatttttcgcgtaaaatccaggttcttgggaaatagtttcgag
gtcattatggataccgaaaaccaggcagaaatatcgtttaaaagtacatggaatgcttct
caatctgatgaacttccattaaacagtgacttaaggtttgtgatgttacgagacacccct
ggattttatacgtatgctatcgttgagcgtttagaaggattgccccttgtatatatcgaa
aatctaagagttgtcttcaagcttcaacaggacatgtttcattacatggctatctcggac
gagaggcagaggatcatgccaatgccagtggatcgagagacggggaaggtgcttgactac
aaagaagctgttcttttgacaaatccaactaatccgaatctaaaaggagaggtagatgac
aaatacttttatgcaactgataacaaagacgatagagttcatggatgggttagttctact
attaatcctccagtaggattttggatgataattccgaacgatgaatttcgtactggagga
ccttacaaacaagatcttacttcacatgttggtccaactgtactatctatatttgtaagt
agacattttgctggagatgatcttgtaatcaaatttcaacaaggagagccatggaaaaaa
gttattggccctgtatttttgtatcttaactcaaattcttcagctatggacaatcccacc
atactctgggatgatgctaagagaaagatgaatcaagaagttgcaagctggccttatgat
tttccagtttcagaagagtacatcaaatctaatcaaaggggaatggttagaggccaactt
cttgttaacgacagcactacgactttagtaccctcatccaatggttatatagggttagca
tcaccaggagatgttggatcttggcaaagagaaaacaaagattatcagttttggactaaa
acagacgctatggggaatttcaccatagaaaatgtcatatccggaacatataacttgtat
gcaattgccccaggaattattggggattacaaatacacttttgatgtacaagttactcca
ggttctagtattgaattagggagtttggtttataatcctccaagaaatggagctacactt
tgggaaatcggtgtaccagatcgaacagctgctgagttcttcgttccaacaccacctcca
gaatttaacgtgcacgtataccaaaacaattttgaattaatatttagacaatatggtttg
tgggaacaatatagtgttttatatcctgaaaatgatcttgtctacaatgttgggactagc
aattattcaaaagattggttttttgctcatgttactaggaacataggaaacaagacctat
atatctaccacatggaaaatcatatttaaccttgaaaatgtcgacaatgcatcaaattac
actctccaaatggctcttgcagcagctcaaagagctgaactacaagttcgtttcaacgat
gaaaaagttgtagaacctcattttacgacagggaaaatagggggagataatgcaatcgcg
aggcatggtattcatggattatattttctttatagtatcgaagtaaagggcaatctactt
gtagaaggaacaaacataatttttcttacacaagcaatagctactaaccctttgcaggga
gtaatgtatgattatcttcgtttagaaggacctcatcaatga
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