Solanum stenotomum: 125844001
Help
Entry
125844001 CDS
T08385
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sstn
Solanum stenotomum
Pathway
sstn00040
Pentose and glucuronate interconversions
sstn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125844001
Enzymes [BR:
sstn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125844001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
WSS_VP
Motif
Other DBs
NCBI-GeneID:
125844001
NCBI-ProteinID:
XP_049379175
LinkDB
All DBs
Position
11:52182720..52190074
Genome browser
AA seq
490 aa
AA seq
DB search
MFSVICILLFCLLISFFPQIIVSFNLTLPHQHPYPEAVVQEVQRKVNESISRRQLWNTTM
NAITTQCETGNPIDDCWRCDPNWSKNRQRLADCAIGFGQNAIGGKNGKYYVVSDSSDLDT
VNPTPGTLRYAVIQEEPLWIIFSGDMFIKLKHELIVNSYKTIDGRGAKVHITGNGCITLQ
YISNVIIHNIHIYNCLPSGNTDIRSTPTHVGHRGRSDGDGISIFASRNIWIDHCALSHCT
DGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDKYLPDAGMQVTIAFNHFGVGLVQRMPR
CRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYTAPLDANAKEVTKRVETDEGEWSG
WNWRTDGDVMVNGAFFVPSGEEGLGNQYAKASSVEPKSAAIIDQLTLNAGVFGAPRDKSI
SISYGGGTTTGASGSGGGGSTGAGDDGDFFGMMFGSGAPQKLSSTTYYTILLSLLIILFL
YTNQLFLILL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgttatatgcattctcttgttttgtttgttaatctcttttttcccacaaatt
atagtttcctttaatctcacacttcctcatcaacatccttaccctgaagctgtggttcaa
gaagtacaaaggaaggtgaacgaatcgatttcgagaaggcaactatggaacaccaccatg
aatgccataactacccaatgtgaaaccggaaatccaatagacgattgctggcgctgcgat
ccaaattggtcgaaaaaccggcagcgcttagccgattgcgccatcggcttcggccagaac
gcaataggaggtaagaacggcaaatactacgtcgtttccgattcctccgatctcgacact
gtaaatccaactccgggaacactccggtacgccgtaatccaggaagaaccactctggatc
atcttctccggcgatatgttcataaaattgaaacacgaactcatcgttaacagttacaaa
acaatcgacggccgtggagcgaaagttcacatcaccggtaacggatgtataacgttacag
tatattagcaatgtgattatacacaatattcatatttacaattgtttaccgtcggggaat
actgatatccggtcgacgccgacgcacgtcggtcaccggggtagatcggacggcgacggg
atctcgatatttgcgtcacggaatatatggattgatcattgtgctttatcgcattgtact
gatggcttaattgatgctattatggggtccactggtataacgatctctaatagctatttc
agtcaccatgatgaagttatgctgctgggacatgatgataagtacttgcctgatgctgga
atgcaggtgacaatagcattcaatcattttggagtagggctagtacaaagaatgccaagg
tgtagaagaggatatatacatgttgtcaacaatgattttactgaatggcaaatgtatgca
attggaggaagtgctaatcctactattaatagtcaaggcaatcgatatactgccccactc
gatgcaaatgcaaaagaggtgacaaagcgcgtggagacagacgagggggagtggagtggg
tggaactggagaacagatggagacgtaatggtaaatggagcattttttgtgccatcaggt
gaagaaggacttggcaaccaatacgcgaaagcctcgagcgtggagcccaaatccgctgct
attattgatcaacttacacttaatgccggtgtttttggtgccccaagggataaaagtatt
agtatatcatatggaggagggaccaccaccggagctagcgggagcggtggtggcgggtcc
accggcgccggagatgatggtgatttttttggaatgatgtttgggagcggcgcaccacaa
aaattatcatcaaccacttattatactatcttattatctcttttaattattttatttttg
tacaccaaccaattatttttaatcttactatag
DBGET
integrated database retrieval system
