Solanum stenotomum: 125844005
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Entry
125844005 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125844005
KO
K12874
intron-binding protein aquarius
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125844005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125844005
Spliceosome [BR:
sstn03041
]
Complex B
Other components
Prp19-related factors
125844005
Complex C
125844005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
SLFN-g3_helicase
UvrD-helicase
ResIII
UvrD_C_2
AAA_22
AAA
AAA_16
GPHH
Motif
Other DBs
NCBI-GeneID:
125844005
NCBI-ProteinID:
XP_049379182
LinkDB
All DBs
Position
1:23820510..23835563
Genome browser
AA seq
1586 aa
AA seq
DB search
MTKVYGTGTYDFRRHRVAEYPVEASPQTAEAPQKMLPSMTEKPPESKPGSNIPSSITLAE
IQRDRLTKIAASNWAKTEEKKTFSPELVKEIYDTELTVKGGRKPVPLQRVMILEVSQYLE
NYLWPNFDPEASSFEHVMSMILMVNEKFRENVAAWICFYDRKDMFKAFLDRVLRLKEGRS
LTIPEKINYLLFMINAFQSLEDEIVSKKVLRLAGLQCWHCLSYGRFQMELCVNPDLIKKW
KKIAKRAKEAAKRGESFDTSTMLEVNFLRHLIEEFLEVLDCKVFPQPDSEVNNDLDFTSD
FEGVNDASVLYCERFMEFLIDLLSQLPTRRYIRPVVADVAVVAKCHLSALYRHEKGKLFA
QLVDLLQFYEGFEIDDHLGRQMTDDEVIQAHYDRFQSFQLLAFKKIPKLRELALANVGAI
HRRADLSKKLSVLTSEELRDLVCRKLKLISVDDPCSNRVDFLIEVMVSFFERQQSQKEAI
NALPLYPNEQIMWDESLVPSINYTGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEI
REDIQEAVPHLLAYINNEGEPAFRGWSRMAVPVKEFKITEVKQPNIGEVKPAAVTAEVTF
SISSYKSQIRSEWNALKEHDVLFLLSIRPSFEPLSAEEAANATVPQRLGLQCVRGCEIIE
MRDEEGVLMNDFTGRIKRDEWKPPKGDLRTVTVALDTAQYHMDVGDIAEKGAEDIYGTFN
ILMRRKPKENNFKAILESIRDLMNETCIVPDWLHDIFLGYGNPSAAQWTNMPDLLETVDF
KDTFLDADHVRESFPDYQVCFVDQDGLENVQPSPPFKIKLPRNLKGKAHALPGSENSTTA
SVDAAGMPEVHSERDKLIVEAYIPPDPGPYPQDQPKRNSVRFTATQVGAIISGVQPGLSM
VVGPPGTGKTDTAVQVLNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLG
QGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHV
YSRWEQFLAACAAEKDNPTIVQDKFPFKEFFSDTPQPVFTGQSFGKDMRSAKGCFRHLKT
MFQELEECRAFELLKSTVDRSNYLMTKQAKIVAMTCTHAALKRKDFLQVGFKYDNLLMEE
SAQILEIETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRF
VRLGIPYIELNAQGRARPSLARLYNWRYRELGDLPNVKENAVFHKANAGFSYDYQLVDVP
DYNGRGESAPSPWFYQNEGEAEYIVSVYMYMRLLGYPANKISILTTYNGQKLLIRDVINR
RCVPYDFIGPPHKVATVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLIVAMSRARLGLYV
FCRRSLFEQCYELQPTFRLLLERPDSLALNVEEATSLTNRPVGETGPVSVVSGPEEMQAI
VNFKMHQVYQARMMSHIEYPAHPESVPEPSVEQNVMSLSHSMDTDKTAMEDGDTGPSESM
ESTKVPPDDGEMLVVGQSNGEVDGEDQRVDSGGLGTSTGSTEVSHDDAEMLVASQSNGEA
DGKDQRVDSDGTDLENSSNVESKMEE
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggtatacggaactggcacctacgatttccggcgccaccgggtagctgagtac
ccggtggaagcatcgccgcagacggcggaggctccacagaaaatgctgccttctatgact
gagaagccgccggagtcgaagcccgggtcgaacatacctagctccataacccttgctgag
atccaacgtgaccgcttgacgaaaatcgcagcttccaattgggcgaaaactgaagagaag
aaaacctttagtcctgagcttgttaaagaaatttatgacacggagcttactgtaaaaggg
gggagaaagccagtgccactgcagagggtgatgatattggaggttagccagtatttggaa
aattatctttggcccaattttgatccagaggcttcttccttcgagcatgtgatgtcaatg
atactgatggtcaatgagaagtttcgggagaatgtggctgcatggatctgcttctatgat
agaaaggatatgttcaaggcatttcttgatagggttcttcggctgaaagagggtagaagc
ttgacaattcctgagaaaattaattatctacttttcatgatcaatgctttccagagttta
gaagacgagatagtgagtaaaaaggttttgaggttagccggtctacagtgttggcattgc
ttgtcatatggtcgatttcagatggagctctgtgttaaccctgatctaatcaagaaatgg
aagaaaattgcaaaaagagccaaggaggcagctaaaagaggcgaatcttttgatacctca
accatgctagaagtgaatttcttgagacatctaattgaggagtttcttgaggttcttgat
tgcaaggtttttcctcagccagacagtgaggtcaataatgacttggatttcacaagtgat
tttgaaggtgttaacgatgcctctgtcctatattgtgaacggtttatggagtttctcatt
gatctattgagccaactgccaactagaagatatataaggcctgttgttgctgatgttgct
gtggttgcaaaatgtcatttaagtgctctttataggcatgaaaaaggaaagctttttgcc
cagctggttgacttacttcagttctatgaaggttttgaaattgatgaccatttagggaga
caaatgactgatgatgaggtgattcaggctcattatgatcgtttccagtcattccagctt
cttgcatttaagaagatacccaagctacgggaacttgcattggcaaatgttggtgcaata
cacaggcgcgctgatctatctaagaaactttctgtgcttacttctgaggagctgagagat
ttagtatgccggaagctaaaactgatatcagttgatgatccatgctcaaatagagttgat
ttcttaattgaagtaatggtatctttctttgagagacaacagtcacagaaagaggccata
aatgctcttcctctttaccctaacgagcaaataatgtgggatgaaagccttgtaccaagc
atcaactacactggggaaggatgcctggcacttccaaagctcaacctacagtttttgaca
cttcacgactatcttcttagaaactttaacctctttcgccttgaatcgacttatgaaatc
cgtgaggacatccaagaggctgtgccacatctccttgcttatatcaataatgaaggagag
ccagcctttcgaggttggtcgagaatggctgtgccagttaaagaatttaagattacagaa
gttaaacaaccaaatataggcgaagtaaagccagctgctgtaacagcagaagttactttc
agtatctccagctacaaatcacaaataaggtcagaatggaatgcacttaaagagcacgat
gttctatttttactgtctattcgtccttcattcgagcctctcagtgctgaagaagctgct
aatgcaaccgtaccacagaggcttggtctccagtgtgtacgcggctgtgaaataattgag
atgcgtgatgaggagggagttctgatgaacgattttactgggagaatcaagcgggacgag
tggaaaccccccaaaggagaccttagaactgttactgttgcacttgacacagcacaatac
catatggatgttggtgatatagcagagaaaggcgcagaagatatttatggtacatttaat
atattgatgaggaggaaaccgaaggagaataatttcaaagccatcttagaatctataagg
gatctgatgaatgaaacatgcatagttcctgattggttgcatgatatatttttgggctat
ggaaatccttctgcagcacagtggactaatatgccagacctccttgaaacagtagatttt
aaagataccttcctagatgctgatcatgttagggagagttttcctgattatcaggtttgc
ttcgtcgaccaagatggcttagaaaacgtgcaaccaagccccccttttaagattaagctt
cctaggaatctcaaagggaaagctcatgcccttcctggaagtgagaattctactactgct
tcagttgatgctgcaggcatgccagaagttcattccgaaagagacaagcttattgtcgaa
gcatatatccctcctgatccaggtccatatcctcaggatcaaccaaagcggaactcggtt
agatttaccgcgacacaggttggagcaatcatctcaggcgttcagccaggtttatccatg
gttgtgggaccccctggtacgggaaagactgataccgctgtgcaggttttgaatgttctc
tatcataattgcccttctcaacggaccctgataatcactcattcgaatcaagctttaaat
gatctttttgagaagataatgcaaagagatgtgccagctcgctaccttctccggcttggt
cagggagagcaagaattagcaactgatcttgacttcagtcgtcaggggagagtaaatgcc
atgcttgttcggcggctagaactgcttagtgaagttgaacgccttgcaaggtcccttcaa
ctgcctgaagatgttggttatacatgtgaaactgcgggctacttctggctgcttcatgta
tactcacggtgggaacaatttttagctgcttgcgctgcagagaaagataacccaaccatt
gttcaggataagtttccctttaaggaattcttttctgatactccccagccagttttcacg
ggtcagtcttttggaaaggacatgcgttcagctaaggggtgctttcgtcatttgaaaaca
atgtttcaagaacttgaagaatgtagggcatttgaattgctcaagtctactgttgatcga
tctaattacctgatgaccaaacaggcaaaaattgtggcaatgacctgcactcatgcggca
cttaaaaggaaggattttcttcaagtgggttttaagtatgacaacctgttgatggaagaa
agtgcccaaattttggaaattgaaactttcatcccgatgttgcttcagaggcaggaagat
ggctatgctcggcttaaacgctgtatactgattggggaccatcatcaattgccccctgtc
gtgaaaaatatggcttttcagaagtacagccacatggatcagagtctcttcacaagattt
gtcagactagggataccatatattgagctcaatgcccagggtagggcacggccaagttta
gctcggctttacaattggagatacagagaactgggggatcttcctaatgtgaaggagaat
gcggtctttcataaagcaaatgctggattctcatacgactatcagttggtagatgtgccc
gattacaatggcagaggtgaaagtgccccttcaccctggttctatcaaaatgagggagag
gctgaatacatagtcagtgtctatatgtatatgcgcttacttggatatcctgcgaataag
atatcaatcttgactacttataatggtcagaaacttttgatccgcgatgttataaacaga
agatgtgtcccttatgactttattggtcctccacacaaggttgcaactgttgataaattt
caaggtcagcagaatgattttatcttattgtctctagttcgtacgcgctttgttggccac
ctccgtgatgtcagaagattgattgttgcaatgtcccgtgctcgtctgggtctctacgtt
ttttgtcgacgttctctgtttgagcaatgttatgaacttcaaccaacgtttcgacttctc
ttagagagacctgattccctcgccctaaatgttgaggaggccacatctttgacaaatcgt
cctgttggagaaactggaccagtcagtgttgttagtggacctgaggaaatgcaggctatt
gtgaattttaagatgcatcaggtctatcaggcacggatgatgagccatattgagtatcca
gctcatccagaatctgtccccgagccaagtgttgagcagaatgtgatgtccctatcccat
agtatggatactgataagaccgctatggaagatggcgatactgggccttcagagtcaatg
gagtccacgaaggttccacctgatgatggagagatgttagttgtgggccagtcaaatgga
gaggttgatggcgaggatcaaagagttgatagtggtggactgggcacatcaactgggtcc
acagaggtttcacatgatgatgcagagatgttagttgcgagccagtcaaatggagaggct
gatgggaaggaccaaagagttgacagtgatggaacagacctcgagaactcttcgaatgtg
gaaagcaagatggaagagtaa
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integrated database retrieval system
