Solanum stenotomum: 125844188
Help
Entry
125844188 CDS
T08385
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125844188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125844188
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
125844188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
125844188
NCBI-ProteinID:
XP_049379412
LinkDB
All DBs
Position
1:16998645..17004866
Genome browser
AA seq
719 aa
AA seq
DB search
MARNKEAVVLVIDVGPSMHSVLPEIEKVCSLLIQKKLVFSRYDEVGFVLFGTADDLYMYF
FPDTKNELKEEIGGYEHVTVLRNIKVVDEDLVDALQKLPRGSVPGDFLDAIVVGMDMLIK
KFGQTNKAKKRLCLITNALSLIKDPFEGTKEDQVNTIATQMTAQGMKMDCVIVRMKQDWE
TNRRIMEENDFLMSVFSNKSSSKVVYVESPTSLLGALRTRNISPVTIYRGDFEISAQLKI
KVWVYKKTSEEKFPTLKKYSDKAPSTDKFATHEIKVDYEYKSIEDPNKVVPPEQRIKGFQ
YGPQVVPISSAELEAVKFKPEKSVKLLGFTDASNVMRHYYLKDVNIFIAEPGNKKAILAL
SALARAMKEMNKVAIVRCVWRQGQGNVVVGVLTPNVSDKDNTPDSFYFNILPFAEDVREF
QFPSFSNLPSSMQPNEKQQDAADKLVQMLDLAPPGKQEVLPPDFTPNPVLERYYRYLNLK
SKHPDAAVPPLDETLRKITEPDVELVSRNKSIIEELCRSFELKDNPKLKKSARRIKERPS
GSDEEREEFDKDADVKAIDSMEYSAKTEVEKVGDVNPVKDFEEMMSRRDNPKWISKAIQG
MKNKIFDLVENSCEGDTFHKALQCLVALRKGCILEQEPKQFNDFLCHLSKFCQEKDLRSF
CLYLTSHEFTLITKAEAPDSEIPEHEARSFMVKPELDSQNMKSEAKAEDDIMSIYLGGK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtaataaggaagcggtagtgttggtaattgatgtgggtccttccatgcactca
gttttacctgagattgaaaaagtttgctcattgttgatacagaagaagctggttttcagc
agatatgatgaagtggggtttgtcttgtttggaactgcagatgacctgtatatgtatttt
ttcccagataccaagaatgaattgaaagaggaaataggaggatatgaacacgtgacagtt
ctgcgaaatatcaaagttgtagatgaagatcttgttgatgctctgcaaaaacttccacga
ggaagtgttcctggagattttcttgatgcgattgttgttggtatggacatgctcattaag
aagtttggacaaaccaacaaggcaaagaaacgtctttgccttattacaaatgctctttct
ctcatcaaagatccatttgaaggaacaaaggaagatcaagtaaacaccattgctacacag
atgacagcacaaggcatgaagatggactgtgtaattgtcagaatgaaacaagattgggaa
acaaataggagaattatggaagaaaatgattttttaatgtcagtattctcgaataaatct
tcctcaaaagtagtatatgtggaaagtccaacttctttattaggtgcacttagaactcgt
aatatatcgccagtcacaatataccgaggtgattttgaaattagtgcccaattgaagatc
aaggtatgggtttacaagaaaacatctgaagagaagtttcctaccctgaaaaagtactcc
gataaggctccttccactgataaatttgctactcatgaaatcaaggttgactacgaatat
aaaagcatagaagaccctaataaagttgtgccaccagaacagaggattaaaggttttcag
tatggacctcaagtagttcctatatcctctgctgagttggaggctgtaaagttcaaacca
gagaaaagtgtgaagctactaggattcacagatgcttcaaacgtaatgcggcattactac
ctgaaagatgtaaatatcttcatagccgaacctggcaacaaaaaagccatccttgcactt
tctgctttggcaagggcaatgaaggaaatgaacaaagtagcaattgtccgatgtgtatgg
aggcaaggacagggtaatgttgttgttggggtccttacaccaaatgtctctgacaaggat
aatactcctgattcattttacttcaatattcttccctttgctgaggatgttcgggagttt
cagtttccttctttcagcaatctgccttcatcaatgcagccaaatgaaaagcaacaagac
gcagcagataaattggttcagatgttggatcttgcaccacctggaaaacaggaagtgtta
ccacctgactttacacctaatcctgttctagagcgttactaccgctatcttaacctgaag
tcaaagcatccagatgctgctgttcctccacttgatgaaaccctcagaaagataacagaa
cctgatgttgagcttgtttctcgaaacaagtctatcatagaggaactctgtaggtctttt
gaactaaaagataatccaaagctgaaaaaatcagcaagaagaataaaagagagaccttca
ggatcagatgaggaaagagaagagttcgacaaagatgctgatgtcaaagctatagactca
atggaatactcagccaaaacagaagttgagaaagttggagacgttaatcctgtcaaagac
tttgaggagatgatgtctcgaagagataatccaaaatggattagtaaggccattcagggt
atgaaaaataagatctttgatcttgtggagaattcttgtgaaggagatacatttcataaa
gcattgcaatgtttagtggctctacgcaaaggttgcatccttgagcaggaaccaaagcag
ttcaatgatttcctgtgccacctgtctaaattttgccaagaaaaagacctgagaagtttc
tgtctatatctcacatctcatgaattcactttgataaccaaggcagaagctccagacagt
gaaattccagaacacgaggctagaagctttatggtcaagcctgaacttgactcacaaaat
atgaaatcagaggctaaagcagaggatgatattatgagtatatacctgggtgggaagtag
DBGET
integrated database retrieval system
