Solanum stenotomum: 125844648
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Entry
125844648 CDS
T08385
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125844648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125844648
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125844648
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
125844648
NCBI-ProteinID:
XP_049379923
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Position
1:47542267..47547205
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AA seq
1135 aa
AA seq
DB search
MDSGDGSSVPRRRTRQQFLKYCVEFIEKRNKLNKNGNTSHSSTICCVDIGEDDHVSCGRK
KRIKVEEKNTSCGGGDASMVRSLEKGKKKVDSAKKKFSPGTCESVMKRPFIQEISDSDSD
DDDNDDEDDSEKEESDPDVVFIGDVAADSIVNSGSGSGSWSNVGSVGLRSGTLNEADDVI
SSTSSMCRTSERRKTEEHIDFEKSEDFVDPLKSQQEFTDTTDSSESESEASSDEDNDQPE
DKDYRVHESSTSSSSQSDDIRSDCDDDYDGGKESEKDYLRSDYIRSGFDNDYDGRMESED
DDLCCSTKKKSKEEGNKESNGRLVQKHRGRAYLLRPRSLSKSKKKLLNHGSCSRPVLLSD
DEGSKSSSSEEGCEAGESVQNAVVQKEQKDVVQKDRKIRKKILKDSEFLRFVVDSIINGG
DHDKITSPEEKQQVPVKEPLPLIFRFEDEEPLPLEKQEWQKEIEDLFAEMDMCTLESCIG
FTNSSVLPMQGSKVSDCQMGNHQLVLDEQIGLICKVCSHVHLEMKYIFPSFADRTRGRYG
RKYFGDSSSLLDAGGFRYYDSSAVHDSAIYMEGTVWDLVPMNAKTTMYPHQREGFEFMWK
NIAGDIILENLREPLSGSRGGCIISHPPGTGKTRLTIVFLQAFLKQFPKCRPVIIAPSNL
LLNWEAEFKKWEVDIPFHNLNSKGFSFEEDEATVSVFHCLSRAGKRDPQLIRMVKLRSWA
KSKSVLGISYDLFRILTGEDGDGYAKEIREILLKLPGLLVLEEGHTARNDQSLMWQALNK
VETEKRILLSGTPFQNNIKELYNTLSVVSPKFAADLEHKWTSLSSCIDKNVRALEELRDM
IAPLVHRCGENVKKESLPGIRDTVIHLKPTDLQKKLLKIIPENPGSFYNQNAVSLISVHP
SLVANRSEFSDLESQLKERGCRLDPNAGVKMKFAVELIRLCDGLNERVIIFSQLLDPLKL
IKEQLNSLFNWTIGREILYIDGKLDVKQRQISINSLNDPKSDVKVLLASIKACSEGISLV
GASRVVLLDVLWNPSVEQQAISRAYRNGQTRVVHVYCPVTSKWEVDKIEQQTRKKYHSDV
LLSRNEVNTCQMNPSYSLSDDNILEAMVQHESLCHIFEKLSHAPRVVPTTCFPAR
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatgggtcctctgttccaaggaggaggactagacaacagtttttaaaa
tattgtgtcgagtttattgagaagaggaacaagttgaataaaaatggtaatactagtcac
tcttctactatttgttgtgtggatattggagaggatgatcatgtgagttgtgggaggaaa
aaaagaataaaggtggaagaaaaaaacacatcttgtggtggaggtgatgcaagtatggtg
agaagtttggaaaaaggaaaaaagaaggtggacagtgctaaaaagaagttcagtccagga
acttgtgagtccgtcatgaaaaggcctttcatccaggaaatatcagattctgattctgat
gacgatgacaatgatgatgaagatgattcggagaaggaggagagtgatcctgatgttgtt
tttattggggatgttgctgcagactctattgtaaatagtggatcaggttcaggatcttgg
tccaatgtgggctctgttgggttaaggagtggtacattgaatgaagcagatgatgttatt
tcatctacctcgagcatgtgtaggactagtgagcggcgtaaaacagaggagcacattgat
tttgagaaatcagaggactttgttgatcctttaaaatcacaacaagagtttacagataca
acagattcttctgagtcagaatctgaagcttcaagtgatgaggataatgatcagcccgaa
gacaaggattaccgggtgcatgaatcatcaacatcaagttctagtcaatcagatgatata
agaagtgattgtgatgatgactatgatggaggaaaggaatcagaaaaagattatctgaga
tctgattatatcagaagtggttttgataatgactatgatggaagaatggaatcagaagat
gatgatttgtgctgttctacaaagaaaaaatccaaggaagaaggaaataaggagtcaaat
gggaggctagtacaaaagcacagaggtcgagcatatcttcttcggccacgctcactatcc
aagtccaaaaagaaattgttaaaccatggaagttgtagtagaccggttcttcttagtgat
gacgaagggtctaaatcctcgtcctctgaagagggttgtgaggctggtgagtcggtgcaa
aatgctgttgttcaaaaggaacaaaaggatgttgttcaaaaggatagaaaaattcggaag
aagattcttaaagattctgaatttctgaggtttgttgttgattctataataaatggcggt
gatcatgataaaattacttctcctgaagagaagcaacaggttcctgtcaaagaaccactt
cctttaatattccggtttgaagacgaggagcctctccccctggagaaacaagaatggcaa
aaggaaattgaagatctttttgccgaaatggacatgtgtacattagaatcatgtattggc
ttcacaaattcatctgttttgccaatgcagggatcaaaagttagtgactgtcagatgggg
aaccaccaacttgttctagatgaacaaattggactcatttgtaaagtttgttcacatgtg
catttggagatgaagtatatcttcccttcttttgctgacagaacccgagggaggtatgga
agaaagtattttggagattcatcatcgctcttggatgctggcggctttagatattatgat
tcttctgcagttcatgattctgctatttatatggaaggaactgtgtgggatttagtcccc
atgaatgccaaaacaacaatgtaccctcatcagcgtgaaggatttgagtttatgtggaag
aatattgctggagacataatccttgaaaatctcagggagcctctatctggtagtagggga
ggatgcataatctcgcatccacctggcactggaaaaacccgtctgaccatagtctttctt
caggcatttctgaagcagttcccaaagtgtaggcctgtgatcatagctccatccaatttg
cttcttaactgggaagctgagttcaagaaatgggaggtggacattcccttccacaacttg
aacagcaaaggtttctctttcgaggaagatgaagctactgttagtgtcttccactgttta
tcacgtgctggaaaaagagatccacagcttatacgcatggtgaagctaagatcctgggct
aaaagtaagagtgtcttgggaattagctatgacttgttcaggattctgacgggagaagat
ggggatggttacgccaaagagattagagaaatacttctcaaattacctggtcttctggtc
cttgaagaagggcacactgctaggaatgatcaaagtcttatgtggcaagctttgaacaag
gttgaaacagagaagcgtatacttttgtctggaactcccttccagaataatatcaaagag
ctgtacaacaccctctctgtagttagtccaaaatttgctgcagatttggagcataaatgg
acgtctcttagcagttgcattgacaagaatgtccgtgccttggaagagcttagggatatg
attgcaccactagttcatagatgtggtgaaaatgtaaagaaggaaagccttccgggtata
agggacactgtgatacacttgaaacccacagatttgcagaagaagctgcttaagataatt
cctgagaacccaggctccttttacaaccaaaatgcggtgtctctgatctctgttcaccct
tcattagtggcaaataggagtgagttctctgacttagaaagccagttaaaagaaagagga
tgtcgattggatccaaatgctggagtaaaaatgaaatttgctgttgaactgatcagactt
tgtgatggcttgaatgagagggttataatattcagccagttacttgatcctctaaagctg
atcaaggagcaactcaattctctcttcaactggactataggccgagagattctctatata
gatggtaaacttgatgtaaagcagcggcagatatcaataaactctctgaatgaccctaag
agtgatgtaaaagtgcttcttgcatcaataaaagcatgttcagaagggataagtcttgta
ggggcttcaagagtggttttgcttgacgttctctggaatccctcagtagaacagcaagcc
atcagtcgagcttacaggaatggtcagactagagttgtgcatgtttactgtccagtgaca
tcaaaatgggaagttgacaagatcgaacagcagacgaggaaaaagtatcattctgatgtg
cttttgtctaggaatgaagtgaatacttgccagatgaatccttcatattctctgtcagat
gataacatactagaagccatggttcagcatgagagtctttgtcatatatttgaaaaacta
tctcatgcaccacgtgtggtgcctacgacatgcttccctgcacgatga
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