Solanum stenotomum: 125844801
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Entry
125844801 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125844801 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125844801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125844801
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125844801
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
125844801
NCBI-ProteinID:
XP_049380093
LinkDB
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Position
11:31853560..31930683
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AA seq
1982 aa
AA seq
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MATTTEANDEASRRSTTKIVDASLWWDPFPHLLAELESVSPSSDLPPPLEKKIKVNHAWF
LDTVSLFKPPNLKSREALDASRLKIGLHQITVEADKKEAALKISSALCLDEVQSYILVDR
TINQKSIVADGVFHELPHLVMLQYYLERQCLMKCTRHIIMQALYIATRSQDSFIVDEAQK
LISDGLDRKFFSVLQENLHSNFPENMDVDLYTLWAEEIVIEDNLVLDVLFLIFYEFCPCT
GELWKKLCSLYEGFISNSYNFGKLAVSAEAVSSIYHAKLQLLLILIETLDLENLLQMVHD
ETPFRQGYVTFSLSEVEEIDAMVSTFDVFENNESGPLVLAWAVFLCLISSLPGKEENNKL
MEIDHIGYVRQAFEAGSLSSFLEIIENDILRDFDFFQGPITGFRSVLRTFLSAFIASYEI
NLQLEDGNLKLILDILCKIYQGEESLCTQFWDRESFVDGPIRCLLCSLEGEFPFRTAELL
QLLTALCEGAWPAECVFNFLDKSTGLSSPVDISSCAIVNDASQTVMVVQPLQLPGIEGLV
IPSGTRGHLLKMIDRDIALVRWEFPQSGIVVLLLRLAQGLYLEKTSEIVMTLGFLSRLVT
FNMGVCYSLLDLGGYMHDEMNSPTEHLRINVAEIICAWIKNLSPNCSGVALMSMGVNILA
KMLKCSPYHVSRLIVQANIFDVAFKTNPFKVDSNGLSSGSWLLSGRLAKMLLIDCEQNDC
QLTLSVLDFTMQLMDSGMENDVVLALVIFSIQYVLVNHEFWNYKIKHTRWKVTLKVLEVL
KKCILSISYIQKLGEVVKDILFGDSSIHNALFRLVCTTSDGLEKLYFSRLYGLTDIEGLQ
QAIVLGLDILSSMLSDLSRVVPTFTVFCQAVMSLTAKPVPVVTAVISLMSFFRNPKIQVG
AARLLSRLFIIGDDSQSYALSNVYFGLDDKQIYKFKNTICSILCQEKVESEDLIIATFKM
LTSAARYQASFLTAVIALEENSISESCNGDNHPANNDALQCNAANILDCIWIYVKRSDDL
VMTKSRIMCNVLNFLKALWQGAAHYTNLLKQLRNSDFWEKLLISAVLSISKKSCQSDSTT
ELELQNLAYRYQCQHNVLDVVACEMILQKKILHSELVTKESSKCLHNGSDGCKVATAESS
CYLKEIFGAWCGSSLDAETIKTFVSFEYDDSVKLRARVAAGLFAVRIMCKVKGGDRGSLS
VSLVDKVTNLWQKLRKLPAFSELMAIYTKHGYSGGNELDDLILNDLFYHLQGELEGRHIS
HMPFKELSQYLLQSNFLQTYQRKHHEDIFPQTDGVCLYDTDRLQGDMAIDLWDLSDWKAS
KAVAEMLLLSLQNVNVMVSLTTSKLSALIALATTFSISDNDNVSFASLDNEVRSGRKIPE
KSLSSSIDNICQSLHRTIELLPPVSDASEDIVDILAAQAELLFHFTRSLSTHLSLSTCLL
ILKTSGYGLKVLCNCRPLVNGVFYPMKIFLMLVLFSLKSSWRDSRLGVQTKIEHNEALPE
AANVSLGLLPLICNCIELNEHCSLSVIITDQIIKGFSTPATWFPIIQKHLPMQRIVLKLQ
DKSSYSNIGIILKFLLTIAHVKEGAEMLVKTGFFASLSVLLADLSNGRPLSVVERERNLA
NTFENNERAQPIWGLSLAVVTAIINSLGESSIFNVEHVVTYFLLEKADLISYYLSAPDFP
PDDHDKKRLRALKPHTSLSALREIENTVMLICVLAKHRNTWSRAMKEMESQLRERCIHLL
AFISCGTPRHGESPGRVPPIFCHPTLREEYEWHKKPSSISSKNGWFAFSAYCCSLNPKYS
SFSSRTATLIKDQPNEHANLTSQTHFSDAMSIQIYRITSLLLKFLCQQAEDAAARAEEVG
FVDLAHFPELPMPDILHCLQDQGICIVTELCEANKLKQVTSEIQGVCILLLQITVMALYL
EFCVIQICGMRPVHGHVEDFSKEFYALTKAMEGHAFLKESMNSLKQMVSFVYPELLQAED
VV
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggccacaactacagaagctaatgatgaagcttcaagaagaagcaccaccaagattgtt
gatgcttcgctttggtgggaccccttcccacacttgctcgctgaactcgaatctgtttct
ccctcctctgacctccctcctcctctggagaagaagataaaggtaaatcatgcatggttt
ctggacacagtttcactatttaagccaccaaacctgaaatcaagggaggctttagatgcc
agccgactgaagattggtctacaccagattactgtagaagctgataaaaaagaagcagcc
ttgaaaattagttctgctttgtgtttggatgaggtgcagtcatatattcttgttgataga
accattaatcaaaaaagtatcgttgctgatggtgtatttcacgagcttcctcatttggtt
atgcttcagtattatttggaacgccaatgtttaatgaagtgcacgcgtcatataattatg
caagctttatatatcgcgacaagatctcaagattcgtttattgtagatgaggcacagaaa
ttgatttctgatggactggacaggaaattcttttctgtcctgcaggagaatctacactct
aactttcctgagaacatggatgttgacctttatactttgtgggctgaagaaatagtaatt
gaagacaatcttgtattggatgttcttttcctcatattttacgagttctgcccctgcacg
ggtgaactgtggaaaaaattgtgctcactttatgagggattcatttcaaattcttataat
tttgggaagttggctgtatctgctgaagcagtttcctctatttatcatgccaaactgcag
ctgctgcttatcctcatagaaactttggatttggaaaatcttttgcagatggttcatgat
gaaactccgttcaggcagggttatgttactttttctttgtcggaggtggaagaaattgat
gctatggtgtccacttttgatgttttcgaaaacaatgaatcgggaccattggttttggca
tgggcagtgtttctctgtctaatttcatctcttccaggaaaagaagaaaacaataaactg
atggagatcgatcatattggttatgtccgccaagcttttgaagctggatcattgagttct
tttcttgaaattattgaaaatgatatactgagggattttgatttttttcagggtcctatt
actggttttagaagtgttttgcggacatttttatcagcatttattgcatcttatgagatc
aatctccagctggaggatggtaacctgaaattgatattggatattctttgcaaaatttat
caaggggaggagtccctctgtactcagttttgggatagggaaagttttgttgatggtcct
atcaggtgccttctttgcagtttggagggtgaattcccatttagaactgctgagctttta
cagttgttaactgcactttgtgaaggagcgtggcctgcggaatgtgtatttaattttctc
gacaagtccactggattgtcatctcctgttgacatcagtagctgtgcaattgtgaatgat
gcttctcagactgttatggtggtccaaccattacaacttcctggtattgagggtctggtc
attcctagtggaacccgtggtcatctgttaaagatgattgatagggatattgctctagtt
agatgggagttcccgcaatctgggattgtcgtgctgcttttgcgtttggcccaagggctg
tacttggagaaaaccagtgaaatcgttatgactcttggatttctcagccggcttgtgact
ttcaacatgggtgtttgctattctcttctggaccttggtggctatatgcacgatgaaatg
aattcaccaacagaacacctgcgtattaatgtggctgaaatcatttgtgcctggatcaag
aatctgtctcctaattgctctggtgtggcgttgatgtcaatgggagttaacattttagca
aagatgttaaaatgctcaccatatcatgtttcaagattgatagtccaggcaaatatcttt
gatgttgcttttaagacgaatcccttcaaagtagactccaatggcctatcgagtggatcg
tggttgctttctggtcggctcgcgaaaatgcttttgatcgactgtgagcagaatgattgt
caattgacactttcagtgcttgacttcaccatgcagcttatggattctggaatggaaaac
gatgttgtccttgcactagtcattttctccattcagtatgtccttgttaatcatgaattc
tggaattataaaatcaagcacactcggtggaaggtgacactgaaggtgcttgaagtcttg
aagaaatgcattttgtccatttcatatatccagaaacttggtgaagtggtcaaggatatt
ttatttggtgattcttcaatccacaatgcactctttcgacttgtttgcacaacttcagat
ggcctggagaagctctatttcagccggctttatggactgacagatattgaaggattacag
caggctattgtcttgggattggatattctttccagtatgctttccgatttgtcaagggtt
gtgcccactttcaccgtcttttgtcaagcagtcatgtcactgacggcaaaaccagtgcct
gtggttactgctgtgatatcactgatgtcattcttccgaaatcctaagatacaggttggt
gcagcaagactgctctccaggttatttattattggagacgactcacaatcatatgcactt
agcaatgtatatttcggtctggatgacaagcagatatataaatttaaaaataccatttgt
agcattctttgtcaagaaaaagtagaaagtgaggatctcataattgctactttcaagatg
cttacttctgctgcacgctatcaggcttcttttcttaccgctgtgatcgctttggaagaa
aattcaatttctgaatcatgcaatggtgacaatcatccagccaacaatgatgcattacag
tgcaatgctgcaaacatattagattgcatatggatttatgttaaaagatctgatgatctt
gtgatgaccaaatcacgtataatgtgtaatgtgctaaacttcttaaaagcattatggcaa
ggagctgctcattatacaaatcttctgaagcagctgagaaattcagacttctgggaaaag
ctactgatttctgccgtgctttccataagtaagaagagttgccaatctgatagcacgacc
gaattggagctccaaaatctggcatacagatatcagtgtcaacataatgtattggatgtg
gtggcctgtgaaatgatcctgcagaaaaagattttacattctgagttggtcacaaaagaa
tcttccaaatgtttacataacgggtcagatggctgtaaagtagcaacagctgaaagttca
tgttacctgaaggaaatttttggagcgtggtgtgggagctcattggatgcggagactatc
aagacatttgtttcatttgagtatgatgattctgtaaagctgcgtgcaagggttgctgct
ggtctgtttgctgtgcgcatcatgtgtaaagtaaaaggtggtgatagaggaagtttgtct
gtttcacttgttgataaagttactaacctgtggcaaaagttgaggaagttgccagccttt
tctgagttgatggctatttatacgaagcatggttacagtggaggaaatgaactggacgac
ttaattctcaatgatttattctatcatctgcaaggagagcttgaaggtagacatatttcc
cacatgccattcaaggagctgtcacaatatctgctacagtcaaatttcttgcaaacatat
cagcgcaagcaccatgaggacattttccctcaaactgatggtgtctgcttatatgacact
gaccgtctgcaaggggacatggctattgatttgtgggatctttcggattggaaagcatcc
aaagcggttgcagaaatgctgttgctctctttgcagaatgtgaatgtcatggtgtcactc
acaacatccaagctttcagctttaatagctttggcaactactttctccatatctgacaat
gataatgtgagttttgcgtcacttgataatgaggttagaagtggcagaaaaattcctgaa
aaatcattgtcatctagcattgataatatatgccagtctctccaccgcacaatcgagcta
ttacctcctgtttctgatgctagcgaagacatagttgatattcttgcagctcaagcagag
ttgcttttccactttaccaggtctctgagtacacatttatctttatctacatgccttctg
atattaaaaacttcaggttatggcctcaaggtgttgtgtaactgtaggccattggttaat
ggtgttttttatccaatgaagatatttttgatgctagttctcttttcactcaaatcaagt
tggagagattctcgtcttggagtacaaacaaaaattgagcataatgaagccttacctgag
gcagctaatgtgagcttggggctactaccgctgatttgcaactgtattgaacttaatgaa
cattgctccctctctgtgattattaccgatcaaataatcaaaggtttttcaacacctgct
acttggttccccataattcaaaaacatctcccaatgcagcgtattgttcttaaacttcaa
gataaaagctcctattcaaacattggcattatattgaagtttcttttgactattgcacat
gtgaaggaaggggctgagatgcttgtaaaaactggtttctttgcatcgttaagtgtgttg
ttggctgacctatctaatggtagacctctctcagtagttgagagggagagaaatctggca
aacacctttgagaataatgaaagggctcaacctatttggggacttagcttggctgtggtt
acagcaattattaactctttaggagaaagttcgattttcaatgtggaacacgtggtgact
tacttcctcttggagaaggctgatctaatttcatattatctaagtgctccggattttcca
ccagatgatcatgataagaaaagacttcgggcactcaaaccacatacttcattgagtgca
cttagagagattgaaaatacagttatgttaatctgtgttctggcaaagcataggaatacc
tggtcaagggccatgaaagaaatggagtcacagttgagggaaagatgcatccatttattg
gcctttattagctgcggtacaccacgtcatggggaatcaccaggaagagttccccccatc
ttttgtcatcctacccttagggaggagtacgagtggcacaaaaagccatcatctatcagt
agcaaaaatggctggtttgctttttctgcttattgctgcagtctaaatcccaaatattca
tctttttcgtctagaactgctactttgatcaaagatcaaccaaatgagcatgctaacctg
acttcgcagacacacttttcagatgcaatgtctattcagatatacagaattacctctctt
ctccttaagtttttgtgtcaacaagctgaagatgctgctgcaagggctgaagaagtgggt
tttgtcgatcttgctcattttcctgagctaccaatgcctgatatccttcactgcttgcag
gatcaaggaatatgtattgtcactgaattgtgcgaagccaacaagttgaagcaggttact
tctgaaatacaaggggtctgtattttgctgttgcaaattactgttatggcattgtacctg
gaattttgtgtgatccaaatctgtggaatgagacctgtccatggacatgttgaggacttc
tccaaggaattttatgctctgacaaaagctatggaaggacatgcatttttgaaagaatct
atgaactccttgaagcaaatggtgtcttttgtgtatcctgaattattgcaggcagaagat
gtagtatga
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