Solanum stenotomum: 125845148
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Entry
125845148 CDS
T08385
Name
(RefSeq) chromatin structure-remodeling complex protein SYD isoform X1
Organism
sstn
Solanum stenotomum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
ResIII
DEAD
DEAD_2
Motif
Other DBs
NCBI-GeneID:
125845148
NCBI-ProteinID:
XP_049380539
LinkDB
All DBs
Position
11:complement(11231045..11263583)
Genome browser
AA seq
3283 aa
AA seq
DB search
MTNPNNVELEAAKFLHKLIQESKDEPTKLATKLYVILQHMRSSGKESSMPYQVISRAMET
VVKQHGLDIEALMSSRLPVSAAAQAGEAASSQVAGSSQRPGVTRDSKANFLGNEMVSGPS
GSGHGIYQASAPHISGTGVKLPVMAPPASNSSQPVEAGISSPMQFGSPSIDNHGYAAKLH
KDGSTEPFSGPTSADLVVGRTAAGRALEHEGGSNMLGNASKISQGGMPNNVPEKSILRSE
TIRDAGMLSVAAQAPVSTMPFKEHHLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNFYPK
EDRRELVDHKGREQLVTDQGSASEVTRTFGGAGETDRLSSGPTPSGILTDTNSSMEAENA
NLMEDKNGQLDPSEHADERRPQRKMRMIQDAEMSIQDATESQASALRGVPTDPKSFPPYN
HENAPANTEQLGMFPQASSVMGTSKQMKPDLSGRSGTDTSKVSPPASANTHGSGLLVRDN
HTGHSQNLVDSNAQGNRHADSNLPSLPLRQQWKSVPGVINQSPTMMQVKDSNITLKNLSQ
VQETDQEDDNISASTDRLSSPRHTMLEKWILDQRKRKLISEQKWSKKQQKTDERIAASAE
KLKESVSSSEDISAKTKSVIELKKLQLLELQRRLRSEILYDFFKPVATDMERLKSIKKHR
IGRKSKQFERYEQRMKEERQKRFRERQKEFFSEIEVHRERLEDVFKMKRERWKGFNKGAK
EFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLG
SKLKEAKSIARKFETDMGDNRNSGVVEEDEIDFGDADETDQAKHYLESNEKYYLMAHSVQ
ETIAEQPSSLKGGKLRGYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLMCYLMET
KNDRGPFLVVVPSSVLSGWESEINFWAPDMLKIVYSGPPEERRKLFKERIVHQKFNVLLT
TYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNADLKHYRSNHRLLLTGTPLQNN
LEELWALLNFLLPNIFNSSEDFSQWFNKPFESGDSSPDEALLSEEENLLVINRLHQVLRP
FVLRRLKHKVENELPSKIERLVRCEASSYQKLLMKRVEDNLGAFGTSKARSVHNSVMELR
NICNHPYLSQLHVEEVHELVPKHYLPTFVRLCGKLEMLDRLLPKLKATDHRVLLFSTMTR
LLDVMEDYLCWKQYKYLRLDGHTCGGDRGALIDKFNQPNSPFFIFLLSIRAGGVGVNLQA
ADTVIIFDTDWNPQVDLQAQARAHRIGQKKDVLVLRLETVQTVEEQVRAAAEHKLGVANQ
SITAGFFDNNTSAEDRREYLEALLRESKKEEDAPVLDDDSLNDLIARSEPEIDIFESVDR
RRREEEMEIWKKLCLESGTQSSELIPPLPSRLLTDDDLKPFYEAMKICDKPVVAPSPGLK
RKGQSLGGLDIQHYGRGKRAREVRSYEEQWTEEEFEKMCLAESPQSPSLKEEIQEKNSPS
ASGTCPDPVVAKSEIQTPAPYQPPLQQPVQELPQHVGPIVQQSPVTVTPPSKRGRGRPRR
TAIVTEISPSPVVISAIAASIKVDSNTIAENTSTSQATSGPVSVSFPCASSVESTSATIL
QNVTGVAPSHQSIVPSVAVVSQSGPPCPPTSGQGRGRGRGRGRGRGRKPQTGGEAPGRRG
KQQNLTAEAFPTPPTQAVSEPVSAAQGVNDMSSTHHMPPTPPAVGEPDLVPQVVAGLGSK
NLGHASVSMRDASKELNSVVPLAASSSSKELTPVSTVSVIPSSAASQDPSSISPPGVLQS
SSRNHSDHLSLSAAQTEATLQVNSISVVPHSSPSAGKETSSVSPVFLHSLTSKDSNSVVP
TLVPASSSACVELSSVCPLPAVAPSSSIGHNSVCDSSNLKSTCQQESGVVTAHTSDPVPP
LPVISSVSQYSTPPTAPKPGRGRGRKAQTGSEASRRRGKRQDLVTAAVTEGLSAQDPRLI
EPPQKRTRLSVGRKPTTRSKRENESQQVVDQSVASQKTPDFAGGEISKNMVSSEVNPHNS
AINRDASQSHAIPVPSQMGDNLNGDVATAEDPLYDAQQKENVVQSVTSKSCSSPHVEPQI
NTVNSDDSPSQEQTAIVQLDASQKIPYPGTRQIPQAMACCEVELHSNSIKSDESQASGDV
PSCEVATTKEVLSEGQQTMKVQSAASQTPSVHSVGKMPEDIGCEVATTKEVLTEDQQTMK
VQSAASQTPSVHSVGKMPEDIVSNEVLPQCDAIQTDASQSHVTLASSGSMAPVTDCPVEK
SEGNSKGDDGDKTETNSIDGSNMEVPIGALELTSSDDLNKSGDAEGKTSSSLSGVLPTSS
ELVSRPSTETEVYLGSVGSGKVSFNSGSTQSLSESVSAKTDVEQLQTEDLPLDKSFVSKA
EAASTEHLAGGILGKEQETGDTMEETVVSPAVETDNLNMKGIASFTSPSTEAESLVDEPP
VCGSYEPAKDKLEKTAEGTHSDKGAMAEVCEQDKLSVNVSLETTKGLSRGEKEKYRIPET
FEKQVNVAESLTEECGKDLAAHGPEMKDSDVSEVAPSPRNESESSFTVGTSQRTFEEQVN
VAESLTEECGSDLAAHSPEMKDSDVSEVAPSPRNESQSSFTVGTSQSEPERQAIAEANLH
PSISETSPSTESGAQKESLSPKLASNAEPVEALTETFASRHDTNYVAELQGNLSFDVKDD
LSNSEVDVSQLCSADGSSENHPELEQVVVEDMRTNICEESASDEVDDIVLRQTENADGQC
HDGLSVETHESKRAEDKVDVLNGELNKHLSSTIAGTSKKVADLELVAEENTGKINDGSED
AGQVAEKSEDMAIRDLTVEGQESKETDATGDTSTSKNEVESQSAVVENIGRMYNKSVVSG
EVTADELLIEGSEHLHVLDHAIEVQGNKAFDATRDASESNSELNEAQPGGTYQIGSELQL
VAEQDSETMNKKLTLPDATAVEPQPAVSENLSIQDPAHQGPKNQTSDPTEDFSTLNNELN
ESQPKAADGTCEIAAESHLVSKQNIEIHVEVATGDVIAKNAAVGKSENFPSIDVAVEEKG
KKESDVTYEISDSELKEPKTSQTTIEVKTHTICEESGMTDKDVTAENAAVGKSENFPSID
VAVEEKGKKESDVTDGISDSELKEPKTSQSTIEVKTHIVCEELGMTDKEVAPLEVETPFG
DLSGSSGRDLEVEGQEKEKSAASKDVSSPENEEHKCSPGARAAYNGAESQLVTERDSETV
LTKEVFSGKEEISSIKLAGDEDVPTAIEYGDQELLSATGAGDD
NT seq
9852 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatccaaataatgttgagctggaggcagcaaagtttctgcacaagcttattcaa
gagtctaaggatgagccgactaaattggctacaaagctttatgtgattttacaacatatg
agatccagcgggaaggaaagctcaatgccttatcaagtaatatcaagggcaatggagact
gttgtcaagcaacatggtcttgacattgaggctttaatgtcctcgcgtcttcctgtgtct
gctgcagcacaagcaggagaagctgcatcatcacaagtagctggatcttcacagaggcca
ggggttactagagactctaaagcaaattttctgggaaatgagatggttagcggtccaagt
ggcagcggacatggtatttatcaagcatctgcaccccacataagtggtacaggtgtcaaa
cttcctgtaatggcgcctcctgcttctaattcatctcagccagtagaggcaggaatttca
agtccaatgcagtttggaagtccttcaattgataatcatggttatgctgcaaaattgcac
aaagatggaagcacagaacctttctctggtcccacctcggctgatcttgttgttggcaga
actgcagcgggaagagcactagagcatgaaggaggatctaatatgttaggaaatgctagc
aagatcagtcaggggggcatgcccaacaatgtcccagagaagagtatacttagaagtgaa
acaatcagagatgcagggatgttgtctgttgctgctcaggctcctgtatctaccatgcct
ttcaaagaacatcatttgaaacagcttagggcacaatgtcttgtgtttttggcttttagg
aatggtttaatgccaaagaagcttcatcttgaaattgcacttggaaacttctatccgaaa
gaagatcgcagagaattggttgaccataaaggaagggagcaactggttactgaccaaggc
agtgcatctgaagtcacacggacatttggaggagctggcgaaactgacaggctttcttct
ggtcctacaccttctggaattcttactgatacaaattcgtcaatggaggcagagaatgca
aacttgatggaagataaaaatggtcagcttgatccttctgagcatgctgacgaaaggaga
cctcaaagaaaaatgagaatgattcaggatgctgaaatgtccatccaggatgctacagaa
tcacaggcatctgctcttagaggagttcccactgatccgaaatcctttcctccctataat
catgagaatgctcctgcaaatactgaacaacttggaatgtttcctcaagcttcctctgtt
atgggcacaagcaagcaaatgaagcctgatctgagtggtaggagtggaactgacacttca
aaggtatcaccacctgcctctgccaatacccatggatcgggtctgctagtgagagataat
catactggtcattctcaaaatcttgttgatagcaatgctcaaggaaatcgacatgctgat
agtaacttgcctagtttacccttgaggcaacagtggaaatctgttcctggagtaattaat
cagagtcctacaatgatgcaagtgaaggattcaaatataacgctgaaaaatctgtctcaa
gtgcaagaaacagatcaagaggatgataatatttcagcatccacagataggttatcatct
ccaaggcatacaatgctggagaaatggattctggatcaacggaaaaggaagcttattagt
gaacagaaatggtcgaaaaaacagcaaaaaacagacgaaagaattgctgcttctgctgag
aagttgaaggaatctgtgagctcctctgaggatatctctgcaaaaacaaaaagtgtcatt
gagctgaaaaagcttcaattgctggagctgcagcgtcgtttacggagtgaaattctctat
gattttttcaagccagtagcaactgacatggagcgtttaaaatcaatcaagaaacacaga
attgggaggaaatcaaagcaatttgaaagatatgaacaaagaatgaaggaggaacgtcaa
aagagatttcgtgagagacagaaggagtttttcagtgagattgaagttcatagggaaaga
ttggaagatgtattcaaaatgaagagagaacgctggaaaggtttcaataagggtgcgaag
gagttccataaaaggaaggaacggatacatcgtgagaagattgacaggatccaacgtgag
aagattaatttactgaaaatcaatgatgttgagggataccttcgaatggttcaggatgca
aagtcggatcgtgttaacaaactactaaaagagacggaaaagtacctccaaaagcttgga
tccaaattaaaggaggccaaatcaattgcaagaaaattcgagaccgacatgggtgacaat
agaaactcaggtgtggttgaggaggatgaaattgactttggtgatgcggatgaaacagac
caggctaagcattacttggaaagcaatgaaaaatactatttgatggcacatagtgtacag
gagaccatcgcagagcagcctagttctctcaaaggtggaaaattacgggggtaccaaatg
aatggattgcgatggttggtttcactctacaataaccatttgaatggaattttagctgat
gaaatgggcctcggtaaaactgttcaggttatatcccttatgtgttacctgatggaaacc
aaaaatgacagaggaccttttctggtggtagtgccatcctctgtcctatccggatgggag
tcagagataaacttttgggcaccagatatgctcaagatagtttattctggaccaccagaa
gagcggaggaagcttttcaaggaaagaattgttcatcaaaagttcaatgttcttttgacg
acatatgagtatttaatgaacaaacatgatagaccaaaactaagtaaagtgcattggcac
tatatcataattgatgaagggcatcgcataaaaaatgcttcttgcaagttgaatgctgat
ctgaagcactaccgcagtaatcataggttactgttgacgggcactcctcttcagaacaat
cttgaggagctctgggcactacttaacttccttttgccaaatatcttcaattcatcagaa
gacttctcacaatggtttaacaagccatttgagagcggtgacagctcacctgatgaagct
ttgctctcagaggaggaaaatcttttggtcattaaccgtctgcaccaagttttgcgtcca
tttgttcttaggagattgaaacacaaggttgagaatgaattgccttcaaagattgaaaga
ctggttagatgtgaagcttcttcgtatcagaagcttttgatgaagcgagtggaagacaac
cttggtgcattcggaacttcaaaggctcggtcagtccacaattctgttatggagctgcgc
aacatttgcaatcatccgtatcttagccagcttcatgtggaggaggttcatgagctagtt
cctaagcattatctgccaacctttgtgagactttgtgggaagcttgagatgttggacaga
ttactgcctaaacttaaggcaacagatcaccgggtcttgcttttctcaacaatgaccagg
ctgcttgatgtaatggaagattatctctgctggaagcaatataagtaccttcgcttggat
ggacatacgtgtgggggtgacagaggtgcccttattgataaattcaatcagcctaattct
cccttctttatatttctgttgagtattcgtgctggaggtgttggagtaaatcttcaagct
gctgatacagttataatttttgacacagattggaatcctcaggttgatcttcaagcacaa
gcaagggctcataggataggtcaaaagaaggatgttcttgttcttcgattagaaacagtc
caaactgttgaggaacaagtaagagctgctgctgagcataaacttggagttgctaaccaa
agcattactgctggattctttgataataacacaagtgcggaagaccgaagggagtacttg
gaggccctcttgcgagaaagcaaaaaagaggaagatgcacctgttcttgatgatgattct
ttgaatgatcttatagcacgaagtgagccagagattgatatatttgaatcagttgacagg
agaaggcgtgaagaagagatggaaatctggaagaagttatgcttagaaagtggaacacaa
agttcagaactcattcctcctttgccctctcgacttcttactgatgatgacttgaaacca
ttctatgaagcaatgaaaatatgtgataagccagttgtggctcctagccctgggttaaaa
aggaagggtcagagtcttgggggtcttgatatccaacattatggacgtggaaaaagagca
agagaggttcgttcgtatgaagagcaatggacggaagaggaatttgagaaaatgtgcctt
gctgagtctcctcaatcacctagtctaaaggaagaaattcaagaaaagaattccccttca
gcctctggcacttgtcctgaccctgttgttgccaaaagtgaaatacaaaccccagcaccg
tatcagcctcctctccagcagcctgtgcaagaacttccccaacatgttggacccatagtt
caacaaagccctgtgactgtgactccgccatctaaacggggccggggaagaccaaggagg
acagcaatagtgactgaaatttcaccgtcccctgtcgttatttcagcaattgcagctagt
ataaaggtggatagcaataccattgcagaaaatacttctactagtcaggcaacttctggg
cctgtttctgtgtcttttccttgtgcttcttccgtagaaagtaccagcgcaaccatccta
cagaatgtaactggtgttgctcccagccatcagtcaattgtaccttctgttgctgttgtt
tctcagtctggtcctccttgccctcctacaagtggacagggaaggggccgaggtagaggc
cgaggccgaggtcgaggtcgaaagcctcaaactggaggagaagctccagggcgtagagga
aaacaacagaatcttacagcagaggctttccccacccctccaactcaagcagtaagtgag
cctgtctctgcagcgcaaggtgtgaatgatatgagttctactcaccatatgcccccaaca
cctcctgcagtgggtgagcctgatctggtgccacaggtggtggcaggtttgggttcaaaa
aaccttggtcatgcttctgtttccatgagagatgctagtaaggaactgaattcggttgtg
cctcttgcagcatcttcctctagcaaagaattaacccctgtttcgactgtttctgttatt
ccatcatctgctgccagtcaggaccctagttcaatatcacctccaggtgtccttcaatca
tcctccagaaaccattcagaccatctttccctctctgctgcccagaccgaagctactctg
caggtgaattcaatttcagtagttcctcatagttcaccttcagctggcaaggaaacgagt
tctgtgtcacctgtttttcttcattcattaacttcaaaggactccaattcagttgtacct
actcttgttcctgcatcatcgtctgcttgcgtggaactaagttcagtttgccctcttcct
gctgttgcaccctcttccagcataggtcataattctgtatgtgattcttctaacttgaag
agcacttgtcaacaagaatctggtgtagtaactgctcatacttctgatccagttccacca
ttgcctgtgatttcatcagtttcacagtatagtactcctcccactgcacctaagccaggt
agaggacgaggacgcaaggctcaaactggaagtgaggcatcacggcgcagggggaagaga
caggatttggtcactgcagctgttactgaagggctaagtgctcaggatccaagattaatt
gaacccccacaaaagagaaccaggttatccgttgggaggaagcccactacaagaagcaag
cgtgagaatgaatctcaacaagtagtagaccaatcagttgcatctcaaaagactccagat
tttgctggtggggaaatttctaagaatatggtttctagtgaagttaatccacataacagt
gcaatcaacagagatgcatctcaatcccatgctattccggttcctagtcaaatgggtgat
aatctaaatggtgacgttgctactgctgaagatcctctctatgatgctcagcagaaggag
aatgtggtccaatctgttacatctaaaagttgctctagtcctcatgttgagccgcagatt
aacacggtcaactctgatgattctccttcccaggaacaaacagctattgtccagttagat
gcttctcaaaagattccatatcctggcacaagacaaatccctcaagctatggcatgttgt
gaagttgagctacatagcaattctatcaaatccgacgaatcacaagccagtggtgatgtt
cctagctgtgaagttgccacgacaaaggaagttcttagtgagggtcaacaaacaatgaag
gttcagtcagctgcatctcagacaccttcagttcactctgttgggaaaatgcctgaagat
ataggttgtgaggttgccacgacaaaggaagttctcactgaggatcaacaaacaatgaag
gttcagtcagctgcatctcagacaccttcagttcactctgttgggaagatgcctgaagat
atagtgagtaatgaagttctgccacagtgtgatgctatacaaacagatgcatctcaatcc
catgtcactcttgcctcttcaggatcaatggctccggttactgattgcccggttgaaaag
agtgaaggtaattctaagggtgacgatggtgacaagactgagactaattctatagatggg
tcaaacatggaagttcccattggagctttggagcttacatcatctgacgatctgaacaag
agtggagatgcagaagggaaaactagcagcagtttaagcggggtccttcccacaagttct
gagttagtttcccgtccaagcacagagacagaggtatatctgggttccgtaggctccggg
aaagtaagttttaattcgggatcaactcaaagcctgtctgagagtgtgtctgcaaaaact
gatgttgaacagttacagactgaggatcttcctctggataaatcatttgtttcaaaagct
gaggcagccagcactgagcatctcgctggtggcatacttggaaaagaacaggaaaccgga
gacaccatggaggagactgttgtttcacctgctgtggagactgacaatctgaatatgaag
ggaatcgcatcatttacttctccatctactgaggcagaatctttagtggatgaacctcca
gtatgtggatcttatgaaccagccaaggacaaacttgaaaaaacagcagaaggaacacat
tccgataaaggtgcaatggccgaggtttgtgaacaagataagttatcagttaacgtgtca
ttggagacaactaaaggtttaagtaggggggagaaagaaaaatataggattccagaaact
tttgagaagcaagttaatgttgctgaatccctaacagaagaatgtggaaaagatcttgca
gcacatggtccagaaatgaaagattctgatgtaagtgaggttgcaccaagccctagaaat
gagtccgaatccagttttactgttggaacatctcaaagaacttttgaggagcaagttaat
gttgctgaatccctaacagaagaatgtggaagtgatcttgcagcacacagtcccgaaatg
aaagattctgatgtaagtgaggttgcgccaagccctagaaatgagtcccaatccagtttc
actgttggaacatctcaaagtgaacctgaacgacaagcaattgctgaagcaaacttgcat
cccagtatatccgagacttctcccagcacagaatctggtgcccagaaggaatccctttca
cctaagcttgcttcaaatgctgaacctgttgaggctctaacagaaacgtttgccagccgt
catgacacaaattacgtagctgaattacagggtaacttgagttttgatgtaaaggatgat
ctttctaattctgaagttgatgtgtctcaactctgttcagctgatgggtcatctgagaat
cacccagaattggaacaggttgtggtggaagatatgagaactaacatttgtgaggagtct
gcttcagatgaagttgatgatattgtactgcggcaaacagagaatgccgacggtcagtgt
cacgatggtttgtctgttgagactcatgagagcaaaagagctgaagataaggttgatgtt
ttaaatggtgaattaaataaacatctatccagcacaattgctggaacatctaaaaaggtg
gcagatctggagttagttgccgaagagaacacagggaagataaatgatggctcagaagat
gcaggtcaggtggcagaaaagtccgaggatatggcaatccgagatcttactgttgaagga
caagagagtaaggaaactgatgccacaggagatacttcaacatcaaaaaatgaggtggaa
tcacaatctgctgttgtagaaaatataggaaggatgtataacaagtcagtagtatcaggg
gaggtaacagctgatgaacttctgatagaagggtctgagcatttgcatgtcctagaccat
gcaattgaagtacaaggtaacaaagcatttgatgccactagagatgcttcagaatcaaat
tctgagctaaatgaagctcaacctggtggaacatatcaaattgggtcagagttacagttg
gttgcggaacaagactctgagacaatgaacaagaagcttactttacctgatgctacagct
gttgagccccaaccagctgtctctgagaatttgagtattcaagatcctgcacatcaagga
ccaaagaaccaaacatctgatccaactgaagatttttcaactttaaataatgaacttaat
gaatctcaaccgaaagctgcagatggaacttgtgaaatagcagcggagtctcatttggtt
tccaaacaaaacatagaaattcatgtggaggttgctacaggggatgttatagccaagaat
gctgcagtagggaagtctgaaaattttccatcgatagatgttgctgttgaagaaaaaggg
aagaaagaatctgatgtaacatatgaaatttctgattctgaactcaaagaacctaaaacc
agtcaaaccacaattgaagtgaagacacatacaatatgtgaggagtcgggaatgactgac
aaggatgttacagctgagaatgctgcagtaggtaagtctgaaaattttccatcgatagat
gtggctgttgaagaaaaagggaagaaagaatctgatgtaacagatggaatttctgattct
gaactcaaagaacctaaaaccagtcaatccacaattgaagtgaaaacacacatagtatgt
gaagagttgggaatgactgacaaggaggtagctccacttgaagttgaaactccattcgga
gatttgtctggttcttctggcagagacttggaagttgaaggacaagaaaaagagaagtct
gctgcaagtaaagatgtttctagccccgagaatgaagagcataaatgtagtccaggtgca
agagctgcttataatggggcagaatcacaattggttactgagagggactctgagacagtt
ctgaccaaggaagtattttcaggcaaagaagagatctccagtatcaagctagctggtgat
gaagatgtgccaactgctatagagtatggtgatcaagaactattgtctgctacaggggct
ggtgatgattaa
DBGET
integrated database retrieval system
