Solanum stenotomum: 125845160
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Entry
125845160 CDS
T08385
Name
(RefSeq) serine/arginine-rich splicing factor RS31-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125845160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125845160
Spliceosome [BR:
sstn03041
]
Common components
Common spliceosomal components
SR proteins
125845160
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RNA_bind
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
125845160
NCBI-ProteinID:
XP_049380556
LinkDB
All DBs
Position
11:complement(1265923..1271369)
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AA seq
352 aa
AA seq
DB search
MRPIFCGNVEYNARQSELERLFRRYGKVDRVDMKSGFAFVYMDDERDAEDAIRGLDRIEF
GRKGRRLRIEWSKEERNGRRPETSRKSSSSVKPSKTLFVINFDPYSTRSRDIERHFDPYG
KILNIRIRRNFAFVQYETQEDATRALDATNMSKLMDQVITVEYANKDDDDRRNGFSPDRN
HDRGLKRGYDRGRSRSPYGRERGSPDYGRGRARSPSPIRQGRSSPDYGRRPSLNPNHRER
DSEYGSGRSPNIRKERNPDHGNGHSPNPRRLRAGSENGEVHSPPEEGLLESGPSPPRVGR
RGKYSLDDYRGRSRSPRSKPEEIGSPRYAAAESPLPERHRSLSPPTRERSRS
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaggccaattttctgtgggaatgttgagtataatgccagacagtcagagttggagagg
cttttcagaagatatgggaaagtggatagagtggatatgaaatctggttttgcttttgtg
tacatggatgatgaaagagatgcagaggatgctattcgcggacttgaccgtatagaattt
ggcagaaagggacgcagacttcgcattgaatggtcaaaggaagagcgtaatggtaggagg
ccagagacttcaaggaaatcttcatctagtgtcaaaccttcaaagactttgtttgtcata
aattttgatccatatagtactaggagcagggatatagagaggcactttgatccatatgga
aaaatactcaatataaggattagaaggaattttgcatttgttcaatatgaaactcaggag
gatgctactagagccttggatgctacaaacatgagtaaactgatggatcaagtcattaca
gttgaatatgcaaataaagatgatgatgacaggagaaatgggtttagccctgatagaaac
cacgataggggtcttaagagaggttatgaccgaggccgatctcggagtccttatggaaga
gagagggggagtcctgattatggtcgtggacgggcccgtagcccaagtccaatccgtcaa
ggtaggtcaagccctgattatggtcggcgccctagtttgaatcccaatcatagggaaagg
gattctgagtatggcagtggccgtagtccaaacattagaaaggagaggaaccctgatcat
ggaaatggccatagcccaaaccctcgaaggctgagagccggttctgaaaatggtgaggtg
cacagtccaccagaggaaggacttctggaatctggccctagcccccctagggtggggagg
agagggaaatatagcctcgatgattatcgtggccgtagccgtagcccaaggtctaaacct
gaagaaataggtagtcctagatatgctgcagcagaaagtcctcttccagaacgacacagg
agcctttcacctccaactcgagaaagatcccgctcctaa
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