Solanum stenotomum: 125845186
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Entry
125845186 CDS
T08385
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125845186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125845186
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125845186
Spliceosome [BR:
sstn03041
]
Complex C
Other components
Step II factors
125845186
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
DEAD
IBR
OB_NTP_bind
HA2_C
AAA_22
Rcat_RNF216
IBR_1
AAA_19
IBR_2
KH_1
zf-C3HC4_2
ResIII
zf-RING_UBOX
AAA_30
NAT10_TcmA_helicase
KH_Vigilin
WHD_HA2
ABC_tran
RsgA_GTPase
SLFN-g3_helicase
nSTAND_NTPase5
AAA_29
ATPase
ChaC
Motif
Other DBs
NCBI-GeneID:
125845186
NCBI-ProteinID:
XP_049380587
LinkDB
All DBs
Position
11:53452100..53459097
Genome browser
AA seq
1708 aa
AA seq
DB search
MQKRVSCPVTQSGYGFRRNSLEFSKRKIPNFTIQLRATPMNWKLNWQHLNNLIAKLPFTP
ENPSVVDSSFIVGTLSYVEWYQTLEVMVKLWELRLSGGHCCNPILKAKVELPSDREELNE
RLKGVFLEKLNKLINGVLVQTWQKKLGFVIDEIEKISMLLKKPNRVGVYQELWKKKKGIE
GERDLISLRIDEFKNGIKCIIDYLEDSKNYEDFKVFDFGEVIDWNKIHFIMMRECRRLDD
GLPIYGFRQQILQQILSQQVTVLVGETGSGKSTQLVQFLADSGIAGNGSIVCTQPRKLAA
NSLASRVREESQECYDDCSISCNPPHSTCQQFDSKVIFMTDHCLLQHYMGDKTLSNISCI
IVDEAHERSLNTDLLLALIKKLLHQRFDLRLIIMSATVDANQLAGYFFGCGTFHVAGRTF
PVDIKYVPCEDDAHHAVGAIASYVHDVIKMVTEIDRTEGAGAILAFLTSQSEVEWACEQF
KAPLAIALPLHGKLSYDDQNRVFLSYPGKRKVIFTTNLAETSLTIPGVKYVVDSGMVKES
RFEPGSGMNVLRICSVSQSSANQRAGRAGRTEPGKCFRLYSQSDFEDMPRHQEPEIRKVH
LGVAVLRILALGIKNVQDFDFVDAPSPKAIEMATRNLVQLGAVTQRDDASYELTAEGLKL
VKLGIEPRLGKMILSCFDQRLGKEGVALAAVMANSSSIFCRVGSEGDKLKSDCHKVQFCH
PSGDLFTLLSVYREWEIVPREKKNSWCWDNSINAKSMRRCHETVLEMEACLQNELNMILA
SYWRWHPQVHNKCDEVLQSIILSSLAENVAVYSGYDQLGYEVALSGKCVQLHPSCSLLNF
GQRPRWVVFGDVLASANEYLVCVTAFEFSSLVSLTPAPLFDFLKMDALKLEKKVLTGFGV
VLLKRFCGKSNSSINNLVSRIRTSYKDERIGIQVNVDENEVLLYASSRDMESVTFQVNDA
LEYESKLLRNKCLEKCLFNGGSAASASVALFGAGAVIKHLELEKRCLTVDIFPSNGNAID
DKELLMCLERATSGNICMVHKYSGMGQDKEENKWGTVKFLTPDAAEQATFLNKVEFNGGF
LKMVPSRSIHSSDQKMFRSVLKAKVSWPRRYSKGVGFLRCDPMDVPLILDDISDLMIGGN
VIRCEASDKNPDNIVITRLDRDIAETEILEVLRATTNRRILDFFLVRGDSVENPPIATCE
EALRKEISPFMPKKVPFVNSVRVQVFQPKLTEYFAKAAIIFDGSLHLEAAKALEQIDGMV
LPGCLPWQKIRCERLFHSSVSCPAAVYHVIRNQLDSLLASLRRRKVGKCELQRNDNGSCT
VRISATATKVVADLRRPLEQLMKGKIVDHVDITPKVVQLLFSREGSNIMRTIQRETGTYI
YFDKHSLLVSIFGSLDNVDRAQHRFIGSLLALHENKQLEVHLRGGLLPHDLMKRVVQTFG
PDLSALKEKVPGAEFSLNTKRHCIYINGTKDMKQSVEDIISEIAQRSFPTQTTGDDADCP
VCLCELEDPYKLEACCHVFCRTCLLEQCESAIKSREGFPMCCLHQGCAEPILLADLKSLL
SIEKLEELFRASLGAFVAANGSTYRFCPSPDCPSVYRIADPDMVGAPFACGACYVETCTS
CHLEYHPYLSCETYQKVKDDPDCSLEEWSKGKDNVKKCPVCRFTIEKVDGCNHIECKCGK
HVCWVCLLFFDTSDNCYDHLRSVHRSIT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacgggtttcatgcccggtgacccaatcgggatatgggtttcgccggaattcg
ctggaattttcgaaacgaaaaatacccaatttcacaatccaactccgggcaactccgatg
aactggaaactgaactggcaacacctgaacaacttgatagcaaaattacccttcacccca
gaaaacccatcagttgtagactcaagttttatcgtcggaaccctatcgtatgttgaatgg
tatcaaacattagaagttatggtgaagttatgggagttaaggttaagtggtgggcattgt
tgtaatccaattttaaaagcaaaagttgaacttccatctgatagagaagagttgaatgag
agattaaaaggggttttcttggagaaattgaataagttaatcaatggggttttagtacaa
acatggcagaaaaaattgggttttgtgattgatgagattgagaaaatttctatgttgttg
aagaaacctaacagggttggtgtttaccaggagctgtggaagaagaaaaagggtatcgaa
ggtgaaagagatttgatatcattaaggattgatgaattcaagaatgggattaaatgtatc
attgattatttggaggattcgaagaattatgaggattttaaggtgtttgattttggtgaa
gtgattgattggaataaaattcattttatcatgatgagagaatgtagaaggcttgatgat
ggattaccaatttatggttttaggcagcagattctgcaacaaattctttctcaacaggtg
actgttttggttggggagactggatcaggaaagagtacacaattagtgcaattccttgct
gattcaggaatagctggcaatggttctatagtttgcactcagcctcgaaaacttgctgcc
aattctttagcaagtagggttagagaggaaagccaggagtgctatgatgattgctcgatc
tcctgtaatccaccacattcaacctgtcagcagtttgattcaaaggtgatttttatgaca
gatcactgcctattacagcactatatgggcgacaagactttgtccaacatttcatgcatc
atagtcgatgaggcacatgaaagaagccttaacaccgatcttcttttagcattgattaag
aaactacttcatcagaggtttgatctgaggcttattattatgtctgccacagttgatgca
aaccagcttgcaggctacttctttggttgtggaactttccatgtggcgggtaggactttt
ccggttgatataaagtatgttccctgtgaagatgatgcccatcatgctgtaggtgcaatt
gcctcttatgtccacgatgttatcaagatggtgactgagatcgatagaactgagggagcg
ggagctattttagccttcttgacatctcagagtgaagttgagtgggcttgtgagcagttt
aaagcaccactggccattgctttacctttgcatggcaagttatcatatgatgaccaaaac
cgagtgtttctctcctatccagggaagagaaaggttatattcaccaccaatctagctgag
acatcactgacaatccccggtgtcaaatatgttgttgattctggcatggttaaagaaagc
aggtttgaacctggctctggcatgaatgttctcaggatatgcagtgtgagccaaagttct
gctaaccaaagagccggtcgtgcagggagaactgaacctggaaagtgtttcaggctgtac
tctcaaagtgattttgaggatatgcctcgtcatcaggaacctgaaattcggaaagttcat
cttggtgttgcagtgctgaggattcttgctttaggtatcaagaatgtgcaggattttgat
tttgttgatgcaccgagccccaaagctattgagatggccacccgaaatctggttcaacta
ggagctgttacacaaagagatgatgcatcatatgaattaactgcagaaggactaaaactg
gtgaagttgggtattgaacctcggttgggaaaaatgatcctcagttgctttgatcaacgt
ttgggtaaagaaggtgttgcgcttgctgccgttatggcaaattccagcagcattttctgt
agggtcggttctgaaggagacaaactaaaatctgattgccacaaggtgcaattttgccat
ccaagtggggacctctttactttattatctgtttacagggaatgggagattgtgcctagg
gaaaagaagaatagctggtgttgggataatagtatcaatgccaaatccatgagaagatgc
catgagacagtgctggaaatggaagcctgtcttcagaatgagctaaatatgatcttagcc
agttactggcgctggcatcctcaagtgcataacaagtgtgacgaagtattgcaaagtata
attctttcttcacttgcggaaaatgttgctgtgtactcaggttatgatcagcttggttat
gaggttgcgctatctgggaagtgtgtccaactacatccttcctgttcgcttttgaatttc
ggccaacgaccacgttgggtagtctttggggatgtccttgcatcagctaacgagtatctg
gtctgtgttactgcatttgagtttagttctcttgttagcctcactcctgctcctttgttt
gattttctgaagatggatgcactaaagttagaaaagaaggttttgacaggctttggagtc
gtgctactcaaaagattttgtggaaaatctaacagtagcattaacaatcttgtctcgcgc
attagaacttcttataaggatgaaaggataggcattcaagttaatgttgatgagaatgag
gttcttttatatgcttcttcgagagacatggagagtgttacattccaggtaaatgatgct
ctagagtatgaaagtaagctgttgcggaacaaatgcttagagaaatgtctattcaatgga
ggatcagcagcttcggcctctgttgctctctttggagctggtgctgtgataaagcatttg
gagcttgagaagagatgtttgactgtggacatatttccttcaaatggaaatgccattgat
gacaaggaattgctgatgtgtttggagagagccacatctggtaatatttgtatggtgcac
aagtactctggaatgggccaggacaaagaggagaacaagtggggcacagtaaaatttctt
acccctgatgctgcagaacaggctacattcttaaataaagtggaatttaatggtggcttt
ctgaaaatggttccatccaggagcatacacagtagtgatcaaaagatgtttcgctcagtt
ctcaaagctaaagtttcttggcctcgtaggtacagtaaaggagtaggctttctgagatgc
gaccctatggatgttcctttaattttagatgacatctctgatctcatgattggtggaaat
gtcatccgttgtgaggcaagcgataagaaccctgacaacatagtcattactagacttgat
agggacattgctgagacagagatacttgaggtgttaagggcaacaacaaataggagaatt
ctggatttcttcttggtgagaggagattctgtagaaaatcctcccatagctacttgtgaa
gaagcacttcggaaagaaatatctcccttcatgcctaaaaaggttccgtttgttaactct
gttcgtgtccaggtcttccagccgaaactaactgagtatttcgcaaaagcagctataata
tttgatggatctcttcatcttgaagcagccaaggccttggagcaaatcgacggcatggtt
ttgcctggatgccttccctggcagaaaataagatgtgagcgactgtttcacagctctgtt
tcctgtcctgcagcagtttatcatgtcatcaggaaccagctggattctttacttgctagc
ctccgccgaagaaaggttgggaaatgcgagctacagagaaatgataacggttcctgtaca
gttaggatatctgccactgccaccaaagttgttgcagatttgagaaggccactggagcaa
cttatgaaaggcaagattgtagatcacgtggatattactccaaaggttgttcaacttctg
ttctctcgagaaggaagcaacattatgaggacaattcaacgggagacaggaacctatatt
tattttgacaagcatagcttgcttgttagtatctttggttctttagacaatgttgatagg
gctcaacacagatttattggttcccttctggcgctacatgaaaataaacaacttgaggtg
catcttcgtggaggacttttgcctcatgacctgatgaaaagagttgttcagacatttgga
ccagaccttagtgcacttaaagaaaaggtgcctggggcagagttctctctgaacacaaag
cgccattgcatctatatcaatggtactaaagatatgaagcaaagcgttgaggacataatc
tctgaaattgctcaaagaagttttccaactcaaacgacaggagatgatgctgactgtcct
gtttgcttgtgtgaactggaggatccttataaacttgaagcttgctgccatgtattctgt
cggacatgcttgctagagcagtgtgagtctgcaatcaaaagccgggaaggtttccccatg
tgctgtcttcatcaaggttgtgcggaacccatcctgcttgctgatttgaagtctctattg
tcaattgagaagttggaagaacttttcagggcttctttgggggcttttgtggcagccaat
ggtagtacctaccgcttttgcccctcaccagattgcccttcagtttatcgcattgcagat
cccgatatggttggtgctccttttgcctgtggtgcatgctatgtggagacgtgtacgagt
tgtcacctggaatatcatccatacctctcctgtgagacgtaccagaaggttaaagacgac
ccagattgctctctagaggaatggtccaaggggaaagacaatgtaaagaaatgtcccgtt
tgcagatttacaattgagaaggtggatggctgcaatcatatcgagtgtaagtgtgggaaa
catgtttgctgggtttgcttgctcttctttgacaccagtgataattgctatgatcatttg
aggtctgttcaccggtccattacatga
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integrated database retrieval system
