Solanum stenotomum: 125845317
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Entry
125845317 CDS
T08385
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
sstn
Solanum stenotomum
Pathway
sstn04120
Ubiquitin mediated proteolysis
sstn04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125845317
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
125845317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125845317
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125845317
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125845317
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125845317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_like
Beta-prop_WDR75_1st
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
125845317
NCBI-ProteinID:
XP_049380761
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All DBs
Position
11:45150153..45151886
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AA seq
370 aa
AA seq
DB search
MTDISSILHQDQEEEKARCEWDFHLSTIISSCNSLSGSGCDTIGVLEFDPCGNFLASGGI
ARKIRIYAVKSLLQEGEEGERRTSTGAPLALDHGNACDFFMCTPARLGSLKWKPGLGSRV
LGSGDYDGVVMEYDLEKKMPVFERDEHGGRRVWSIDYCHSDPVLGASGSDDGTMQMWDPR
CGDNGKCLAMVQPTKEYSTPVCCVEFNPFKGPIVAVGCADRRVYAYDMRKMVDPLFILDG
HQKAVTYIRFIDERTIISSSIDGCLKMWNAEDQKVLRTYKGHNNSRRFVGLSVWKPGGLI
CCGSESNQVFVYDKRWGEPIWVYGREPIGLTGHDHGFVSSVCWQQKDENQCTLVAGDSDG
VLRVFNGKKR
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgacagatatttcatcaattttgcatcaagatcaagaagaagaaaaagcaagatgtgaa
tgggattttcatctttctactattatttcatcttgtaatagtcttagtggatctggttgt
gacacaattggtgtgttagaatttgacccttgtggtaatttcctagcttccggtggtatt
gctaggaaaattcgaatttacgccgtaaagtctctcttacaagaaggagaagaaggcgag
aggcgcaccagtactggtgcgcctctcgctttagatcatggtaatgcatgtgactttttt
atgtgtactccggcgagactcggtagtttaaagtggaaacccggtttagggagtcgggtt
ttaggatcgggtgattacgatggagtggttatggagtatgacctagagaaaaaaatgcct
gttttcgagcgtgatgagcatggtggtagacgggtttggagcattgactattgtcattcg
gatccggttttgggtgcatccggatccgatgacggaaccatgcaaatgtgggacccgcgg
tgcggagacaatgggaagtgtttagctatggtacaacctaccaaagagtatagtacaccc
gtgtgttgcgtggaatttaatccgttcaaaggtccaatcgtagccgttggatgcgctgac
cggagggtctacgcatacgatatgaggaaaatggttgacccactctttatcctggacgga
catcagaaagcagttacttacattcgatttattgatgagcgtacgattatttcttcgagc
atagatggatgtttaaaaatgtggaatgcggaggaccaaaaggtcctccgcacctacaag
gggcataataatagtaggaggtttgtcgggttatcagtatggaaaccgggcggattaatt
tgttgtgggtcggaaagtaatcaagtttttgtctacgataagagatggggtgagccaata
tgggtctatggacgcgaacccataggtctaaccgggcatgaccatgggttcgttagtagc
gtatgttggcaacaaaaggacgaaaatcaatgcacgctcgtagctggagattcagatggt
gttttacgagtttttaatggcaagaagagatga
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