Solanum stenotomum: 125845344
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Entry
125845344 CDS
T08385
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
sstn
Solanum stenotomum
Pathway
sstn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125845344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125845344
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
125845344
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_2
BHD_1
Transglut_core
RE_CfrBI
Motif
Other DBs
NCBI-GeneID:
125845344
NCBI-ProteinID:
XP_049380797
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Position
11:complement(49591778..49602037)
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AA seq
954 aa
AA seq
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MRTRNQAKRQNQSTANEDSLKHYGEMESLSGCKDEASGNETLANISRGAVGKLLKRVNKS
RGSRGLKTDDSYLCKQDTMGEPENGSSEAEKQLTGTTVVRTTLDAKCCTTDVLQNVPSEL
ENGSTDVQCQSIEREDELDGIDWEDGPVDTLKSESNVKEDTINGVTVEFDAPPDPSKQKT
VRRATAEEKELAELVHKVNLLCLLARGRLVDRACNDPLIQASLLSLLPAHLLKLTDAPKL
TANALAPLVNWCHSHFRVRGANDKEKPFHSALASTLESQEGTPEEVAALSVALFRALNLT
TRFVSILDVASLKPEIEKSYPSGKGPSRAGSGIFSSSTLMVAGPKCSPLSPAKSMAYGKH
NVSDKTSTSAGQATSDKSRETITDKSNKRMSASTSDAQDDSNDACIIKKERPKRKGDLEF
EMQLEMALSTTAVEIARNTMISDVKDVGSTSSNVSPFKKKKIKAEECSTSSHGISTAVGS
RKVGAPLYWAEVYCSGENLTGKWVHVDVVNAITDGEQNVEAAAAACKLPLRYVVAFAGNG
AKDVTRRYCTKWYKIASERVNSIWWDAVLAPLKKLESVATSDVVHFAQGGNDCLLDMREH
SDRELLKNSLYGILLQQRSSLEDMELETRELTEPLPTNQQAYRSHHLYIIERWLNRNQIL
YPKGPVLGFCSGHPVYPRSCVRTLQRKERWLREGLQVKANEIPAKVLKRSGKQNKGRDVE
DDDYGEGDSEGTVALYGQWQTEPLFLPPAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLP
RLVPIAKRLQIDFSPAMVGFEFRNGRSLPVYEGIVVCTEFKDAILEAYAEEEVRREAKER
RRTEAEALSRWYQLLSSLITRQRLHNRYVDGASSQSAVNIATSNEKSSLLAGGSENTRSA
HQEKSEIAKSNSPSFVLAENHEHVFLVEDQTVDEESSTRTKRCCCGFSVQYEEL
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccagaaatcaggcaaagcgacagaatcaatcaactgcaaatgaagactctttg
aaacactatggtgagatggagagcctaagcggctgcaaagacgaagccagtggcaatgaa
actcttgcaaacatatctcgaggtgcagtggggaaacttttgaaacgagtcaacaagtca
cgtggctctcggggtctgaaaacagatgatagttacctatgcaaacaggataccatgggc
gagccagagaatggatcaagtgaggcagaaaagcagcttactggtactacagttgtaagg
actacattagatgctaaatgctgcactacagatgtgttacaaaatgtgccatcggaactg
gaaaatggaagtacagatgttcagtgtcagagtattgagagggaagatgaacttgatggt
attgattgggaagatgggccagtcgatactttgaagtccgaaagcaatgttaaggaagat
acaatcaatggtgtgactgttgagtttgatgctccgcctgatcctagtaaacagaagaca
gtacggcgagcaactgctgaagaaaaggaattggctgagcttgtgcataaggttaacttg
ctttgtttactagcaaggggcaggttggtagatagagcttgcaatgatcctcttatccag
gcttctttactttcactgctgcctgcacatctgctgaagttgaccgatgctccaaaactt
actgcaaatgcactagctcctcttgtcaattggtgccacagtcatttccgtgttagaggt
gcaaatgataaggagaagccatttcattcagctttggcatcaactctcgagtcccaggaa
gggaccccagaagaggttgctgcattatctgttgccctgtttagggccttgaatcttact
accaggtttgtatcaatcttggatgtggcttctttgaagcctgaaattgagaaatcatat
ccctctggtaaaggccctagtagggctggtagcgggatatttagctcttcaacattgatg
gtggctggaccaaagtgttctcctctctctcctgctaaatctatggcttatggcaagcat
aatgtttccgataagacttcaacatctgctggccaagctaccagtgacaagtctagagaa
actattacagataagtctaataaaagaatgtcagcatcaacatcagatgctcaggatgat
tctaatgatgcatgtattataaaaaaagagcggccaaagagaaaaggggaccttgaattt
gagatgcagttggaaatggctctttctacgactgcagttgaaattgctaggaacactatg
atctcagatgtgaaggatgtaggaagtacttcatcaaatgtatcaccgttcaaaaagaag
aaaattaaagcagaagagtgttcaacttcctctcatggaatatcaactgctgttggatct
aggaaagtaggggcacctctatactgggcagaggtctactgcagtggtgagaacctgact
gggaagtgggtgcatgttgatgtcgtaaatgcaatcactgatggagagcaaaatgtggaa
gctgcagcagctgcatgcaagttgcctttaagatacgttgttgcttttgctggaaatgga
gctaaagatgtgacacgcaggtactgtacaaagtggtacaagatagcatctgaacgagtc
aactcaatttggtgggatgcagtattggcaccattaaagaagttggagtcggttgccacc
agtgatgtagttcattttgcacaaggaggtaatgattgcctgctggatatgcgtgaacat
agtgatagagaactcttgaaaaattctttatacggaattcttttacagcaaaggagctct
ctcgaagatatggagttggaaactagggaactgactgaacctcttccaacaaatcaacag
gcttacagaagccatcacctatacataattgaaagatggcttaacagaaatcagatactc
taccccaaaggacctgtattaggtttttgttctggtcatccagtatacccacgatcctgt
gtacgaacactccaaagaaaggaaagatggcttcgcgaggggctccaagtgaaagctaat
gagatacccgcaaaggttctgaagcgttccggaaagcaaaacaaaggacgggatgttgaa
gatgatgattatggcgagggagatagtgaaggaactgtcgctctctatggacagtggcaa
actgaaccactgtttcttcctcctgcagtaaatggcattgtacctaagaatgagcgtggt
caagtggatgtctggtctgagaagtgccttccacctggtacagtccatttgagattgcca
aggttggttcctattgctaaaaggctgcaaatagatttttcacctgctatggttggattt
gaattccggaatggtcgatctctacctgtttatgaggggattgtggtgtgtaccgagttc
aaggatgcaattcttgaggcatatgcagaagaagaggtgagaagagaggccaaagagcgg
aggaggactgaagcagaagctctttctaggtggtatcagcttctttcatcgcttattact
cgacagaggctgcataatcgttatgtagacggggcatcctcacaatcagcagtcaatatt
gcaacgtccaacgaaaaatcctccttactagctggtggcagtgagaacacgaggagcgct
catcaagaaaaatctgagattgccaaatctaatagtccatcatttgtacttgcagaaaac
catgagcatgttttcctagtagaagatcagactgttgatgaagaaagttcaacaaggacg
aaacgatgttgttgtggcttttcagttcaatatgaggagttgtag
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