Solanum stenotomum: 125845521
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Entry
125845521 CDS
T08385
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125845521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125845521
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125845521
Complex B
125845521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
125845521
NCBI-ProteinID:
XP_049380992
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All DBs
Position
11:16724406..16747226
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AA seq
1003 aa
AA seq
DB search
MANNSHFTGMQPPIPPLAGPPQGAIPSMSLQQFQPMLPPQQAQPYVSGSSQHFQPLGHAN
VVMPPQPSQIQFPQPMQQVAGRPVVGGHSMSQGPPNPHDFQRNPPMSNNHMPGSGGPSFP
LSSYNQVNADSSSSQYQTQIHDHRFPSGVQPWMPTSNHNVNSATTMQNTGELAAPLVLPD
ANNGVDSVETTPSDWIEHTSRNGKKYYYNRRTRISSWEKPLELMTEMERADASTDWREFT
SPAGRKYYYNKVTRKSKWKMPDEVKLAREKDTISHASDFGSISSIKTSSPGADGPFVSAQ
GAMTSPIAVSPVANLPAIVASESSSLSGKVSSPTIDAVEMQNSSEPASPAVANSEKIGIA
VTLGNSVTIPVSSETTSAQDAVACGDGVSPENREEVKQDAAITGIGSATPSEEKTVELGP
LVYESKVEAKNAFKTLLESANIGSDCTWDQAMRAIINDRRYGALKSLGERKQAFNEYLSQ
RKKLDAEERRVKQKKAREDFRIMLEDCKELSPSSRWSKAISIFEHDERFKAVERAKDRED
LFEDYKEELEKKERARALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCPRL
EKIDRLEIFQEYIRDLEREEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAVGMLNAKTI
WRDYCIKIKDIAAYLAVSSNTSGSSAKDLFADVVDELDKQYLDDKSRIRDAVRMTKIGLT
STWTLDDFKDAIAKYISSPPISDTNLKLVFEELLERAREREEKEAKKRKRLADEFYELLH
ASKEITASSKWEDCKSLFGDRIMGDESLLLEIFDKFVNELKEKAKEKDRKRQEDKARKEK
ERKDREKKKEKHRRDKHRGDKSRKERERSKKDSTDSDKEIKRSGSDRDKRDSDKEIRRSG
SDRDKKDSDKEIKRSGSDRDKKHRKRHRRSSDDDENEKDYSRSSYRRDSDYKKLKQMDQH
SRSLEANSEGQHKKRKRDHRSDSHRDGDYEDHKDWEFGEDEEV
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggctaataattctcatttcactggcatgcagcctcctatacctcctctggcgggtcct
cctcagggtgctattccatccatgtcactgcagcagttccagcctatgcttccaccccag
caggcacaaccatatgtttctgggtcatctcaacactttcagccacttggacatgcaaat
gttgtgatgcctcctcaaccttcacaaatccaatttcctcagcctatgcaacaggttgct
ggtagacctgtagtaggagggcatagtatgtctcagggaccacctaatccccacgatttt
cagcgaaaccctccgatgtcaaataaccacatgcctggttctggtggcccaagttttccg
ctatcttcatataatcaggtaaatgcagattcttcaagctcccagtatcagacacagata
cacgatcataggtttccatcaggggtacaaccctggatgccaacaagtaatcataatgtg
aattctgcgacaactatgcaaaatactggagaactagcagctccgttggttcttccggat
gcaaataacggggttgactctgttgagactactccatcagattggattgagcatacttct
cgaaatgggaaaaaatactattataatagaaggacaagaatctctagctgggagaaacct
ctagagctgatgacagaaatggagagggcagatgcatcaactgactggagagaatttaca
agtcctgcgggaaggaagtattactacaacaaggttactagaaagtcaaaatggaaaatg
cctgatgaagtcaagttggctcgtgaaaaggacactatttcgcacgcctctgattttgga
tccatttctagtattaaaacatcatccccgggtgcagatggtccatttgtctcagcacaa
ggagctatgacaagcccaattgctgtgtcaccagttgctaacctaccagctattgtggct
tcagaatcatcaagtttatctggtaaggtttcttctccgacgattgacgcagtcgaaatg
cagaactcttcagaacctgcttcgccagctgttgctaattcagagaaaattggaatagca
gtaaccttgggaaattctgtcacgataccagttagttctgagactacttcagctcaagat
gcagtagcatgtggcgatggagtttctccggagaatagggaggaagttaagcaagatgct
gcaataactggaataggaagtgctactccatcagaagagaaaacagtcgagctgggacca
ttagtttatgagagcaaagtggaggcaaagaatgcattcaaaactcttttggaatctgct
aatattgggtctgactgcacgtgggatcaggccatgagagcaataatcaatgaccgaaga
tatggtgctctaaaatcccttggtgagcggaagcaagcttttaatgagtatctgagccaa
aggaaaaaactggatgctgaagagagacgtgttaaacagaaaaaagctcgggaagatttc
aggataatgttagaagattgcaaagagctttcaccatcctcaagatggagtaaggcaatt
tccatattcgaacatgatgaacgttttaaagctgttgagcgagctaaagaccgtgaagac
ctttttgaagattataaggaggaacttgagaaaaaggagcgtgcaagggcattggaggag
cagaagcgcaatagagtggagtatttagaattcttaaaatcctgtgactttattaaggcc
agtagccagtggcggaaagttcaggaccgtttagaagctgatgaaagatgcccccgcctt
gagaaaattgaccgcttggagattttccaggaatatatacgtgatttagagagggaagag
gaggagcaaaggaaactgcggatggaagaattgaggaaagcagaacgtaaaaatcgtgat
gagttccgaaaactaatggaagaacatgttgctgtgggaatgcttaatgcaaaaactatt
tggcgtgattattgcatcaaaatcaaagatatagctgcatatctagctgtatcatcaaat
acttcagggtcatcagcaaaagacttatttgcagatgttgtggatgagttggataaacag
tatcttgatgacaagtcacgaattagagatgcagttaggatgactaagattggactgaca
tcaacctggacgcttgatgattttaaggatgcaattgcaaagtatattagctctccacca
atatcagataccaacttaaagcttgtctttgaagagttactggaaagggccagggagaga
gaagaaaaagaagctaaaaagcgtaagcgtctagcagatgagttctatgaacttcttcat
gcatcaaaggaaattactgcatcgtcgaaatgggaggactgtaaatccctcttcggagat
agaataatgggtgatgagagcttgctgctggaaatatttgacaaatttgttaatgaacta
aaagaaaaggcaaaagagaaggaccggaagcgtcaagaggataaggcaagaaaagagaag
gaaaggaaagatagagaaaagaagaaggaaaaacatagaagggataaacacagaggggat
aagagcaggaaagagagagaaagaagcaagaaagatagtacagacagtgacaaggaaatc
aaaaggtcaggaagtgacagagataagagagacagtgacaaggagatcagaagatcagga
agtgacagagataagaaagacagtgacaaggagatcaaaaggtcaggaagtgacagagat
aagaaacatcgcaagcggcatagacgttcctctgatgacgatgaaaacgagaaagattat
tcaagaagttcttacagacgtgacagtgattataagaaactgaaacagatggaccagcac
agccggagtttggaagctaattcggagggccagcataagaaaaggaaacgagatcatcgg
agtgattctcatagggatggtgactatgaggatcacaaagattgggaatttggcgaggat
gaagaagtttag
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