Solanum stenotomum: 125846128
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Entry
125846128 CDS
T08385
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125846128
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125846128
microRNA pathway
RISC loading complex
125846128
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
SWI2_SNF2
Dicer_dsRBD
Cas3-like_C_2
PXA
CobW_C_DAAF9
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
125846128
NCBI-ProteinID:
XP_049381531
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All DBs
Position
11:52689783..52699183
Genome browser
AA seq
1371 aa
AA seq
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MEPTDVAVSENQHLSADPLPFARSYQLEALEIALKQNTIVYLETGSGKTLIAIMLLRSYA
YLLRKPSRYIAVFLVPTVVLVTQQGDALMMHTDLKVGKYCGKMGVDYWNAATWQQQVDDH
EVLVMIPAILHAALRHSFLQMDMIKVIIFDECHNARGKHPYASIMMEFYHHQLTRENAQL
PRIFGMTASPIKSKASSTADSYWQKIRDLENLMHSKVHTCSSESVLAEYIPFSNPKLKIY
EHVDIPCTLFHTLVHDLERLKEKHECSISQSNLSFMRDGSARRHLSELHSNFLFCLSEMG
AWLAFKSCEENDLCSSDDACVRDFCLTASKIFSARLPSGPHWSIGGDIQANVDAGYLSSK
VNCLLESLLEYRDRKNLRCIIFVERIITAIVLRSLLNELLPERTGWRTEVTTGRISMVKQ
NKIVEEFRKGLVNIIVATSILEEGLDVQSCNLIIRFDPPTTVCSFIQSRGRARMQNSDFL
LMVRKGDDATLTRMQNYMASGEIMRQESLLHASIPCSLLYDELHDEPCYKVESTGAVVTL
SSSVSLLYFYCSRLPSDGYFKPNPTCEIDEETGTCTLQLPKSSPLQGIISVQGDRKILKQ
LACLEACKKLHRVGALTDNLVPDIVEEETINKELECKIKIVEESLYYPSEFVSHCGNESE
AVYYCYLVELQHDSYNDFQLHGIILAVRTKLKCDDEILAFDLDIDRRGRLQVQLNYSKVV
IFTSEEIRRCQRFQVSVFRVLRDRDLSKLQDVLAAVQSPIGSSVSDYLLLPSVGTPPEIN
WKCVNFLLFPSQVLRDKHMNWCSTQGRKRNVNTITGVVCSCMLENSLVCTPHNGHIYCIN
GFLDNLDCNSLMGVRTEESITYREHFKKGYGINICFEEEPLLRGKNISKKAKDSSVELPP
ELCSLIISPLSISTLNTYSYVPLIMHRIESLIMASKLKRMHLDHCTLNVLIPTAKILEAL
TTKNCLEKFHLESLETLGDSFLKYAASIQLFKTYGNDHQGLLTVKRKQIISNAALCRLGC
ARKIPGFIRNEPFNLKAWIIPGDNSQVHSFDEEFLTSSDKMYSRVKQKIKSKRVADVVEA
LIGAYLSSGGEVAAFSFMKWLGVDINFVDAPISRHFPMKAEKPVNVRYLESLLHYKFNNP
SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYVVTTHLYFQYPGLTPGLITDLRSASV
NNECYALSAVKACLHKHILHDSQDLLRHIFSTVEDFKKLDLVSTFGWEVEATFPKVLADL
IESLAGAIFVDSGFNEDTTFQSIRPLLEPLITPQTLKLHPARELSELCDQKGYIKKKNVD
FRENGIVYITVEVEANGAIHKGTHSGRNEKIATKVASKKVLKSLKEYPYNA
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggagccaacagatgttgcagtctctgaaaaccaacacctttctgctgaccctttgcct
tttgcaagaagctatcagttggaagcccttgagattgcattaaagcagaacacaattgtt
tacttggagaccggttctggaaagaccttgattgcaattatgcttcttagaagctatgct
taccttcttcgaaagccttctcggtacatagctgttttcttggtcccgactgttgttcta
gtgactcagcaaggagatgctctgatgatgcataccgacttaaaagtgggcaaatattgt
ggaaaaatgggtgttgattattggaatgcagctacgtggcaacaacaagtggacgatcat
gaggtacttgttatgataccggcaatactacatgctgctttgaggcacagctttttacaa
atggacatgataaaagttataatatttgatgagtgtcacaatgcacgaggcaagcacccc
tatgccagcataatgatggaattttatcatcaccagttaacccgtgagaacgcacaactt
ccaagaatatttgggatgactgcttcccctataaagtctaaagcttctagcacggcagat
agttattggcaaaagattcgtgacctcgagaatctcatgcattccaaggtacacacgtgt
agcagtgaatctgttctggcggagtatatcccattttcaaatccaaagctgaaaatatat
gaacatgtggatattccttgcacattgtttcatacattagttcatgacctggaaaggttg
aaagaaaagcatgaatgttctatttcacagtcaaatctgtcttttatgagagatggatct
gcaagaagacatttatcagaacttcattcgaatttcttattttgtttgagtgagatgggt
gcttggctggctttcaagtcctgtgaagaaaatgatttatgttcgtcggacgatgcatgt
gttagagatttctgtttgactgcatctaagattttctcggctcgcttaccttctggacca
cattggtcaattggaggtgatattcaggctaatgtggatgctggatatttgtcatccaaa
gttaattgtcttctagagtctcttctcgagtacagggaccgaaagaatttaagatgcatc
atatttgttgagagaattattacagccattgttcttcggtctctattgaatgagttgctt
ccggaacgaactggttggagaactgaggtcacaacagggcgtatttctatggtcaaacaa
aataaaattgttgaagaatttcgcaaggggttggtgaacattattgtagcgacatcgatt
cttgaagagggcttggatgttcaaagttgcaacctcatcattagatttgatcccccaact
actgtttgtagctttatacaatcacgtggaagagctcgaatgcaaaactccgactttctt
ctgatggtcagaaaaggagatgatgcaacccttactcgcatgcaaaactatatggctagt
ggggagataatgcggcaagaatcattactccatgcttctattccgtgctcacttctatat
gatgaattgcatgatgagccttgctacaaagttgaaagcacaggagcagttgtcaccctc
agttctagcgtgtcattgttatacttctattgctcaaggctaccgtcggatgggtacttt
aaacccaatcctacgtgtgagattgatgaggaaacaggaacctgcacactacaacttccc
aaaagctcgccactgcaaggaattattagcgtacagggggatagaaaaatattgaagcaa
cttgcatgcctggaagcttgtaaaaaacttcatcgtgtgggtgccttgactgacaatctt
gttcctgatatcgtggaggaagaaaccatcaacaaagaattggaatgtaaaataaaaatt
gttgaagaatcattatactatccatcagaatttgttagtcattgcggcaatgagtcagaa
gcagtgtactactgctacctagttgagttgcaacatgactcttacaacgatttccagctt
catgggattatacttgctgttaggacaaagctcaagtgtgatgatgaaatattggcattt
gacttggacattgataggaggggacgcttgcaagttcaacttaattatagtaaagttgtt
atatttacttctgaagagattcgacgatgtcagaggtttcaagtcagtgtcttcagagtt
cttcgtgaccgtgatctgagtaaactgcaggatgttttggctgctgttcaatcacctatt
ggttcttcagtttccgattatctgttgctcccatctgtgggtacaccccctgagataaat
tggaaatgtgtgaattttttgctgtttccgtctcaagttcttcgggataagcatatgaat
tggtgttctactcaaggtcgcaaacgcaatgtgaacaccataactggggtggtatgtagc
tgcatgttggagaactcattagtatgtacacctcataatgggcatatatactgcataaac
ggttttttggataatttggattgcaactcattaatgggtgtgagaactgaagaatctatt
acctacagagaacacttcaaaaaggggtatgggatcaacatatgctttgaagaagaacca
cttcttaggggaaaaaatatttctaagaaagctaaagattcatctgtcgaattgcctcct
gaactttgttccctcatcatctcacctctctctatttctacccttaatacctattcatat
gttcctttgattatgcatcggattgagtccttgattatggcctcaaagttgaaaagaatg
catttggatcactgcacactgaatgttcttattccaaccgccaagattttggaagcattg
acaacgaagaattgccttgagaagtttcatttggaatcacttgagacacttggggactct
tttctcaaatatgctgccagtatacagctgttcaagacttatggaaatgatcatcagggt
cttctcaccgttaagagaaaacaaatcatttccaatgctgcactatgcaggcttggatgt
gctcgtaaaataccgggatttatccgtaatgagccattcaatcttaaagcatggatcatt
cctggtgataattctcaagttcacagcttcgacgaagagttcctaacgtcctcagataaa
atgtatagtagggtaaaacagaagattaaaagtaagagagtggctgatgtggtcgaggca
ctaataggtgcctacctcagctcgggtggggaagtagcggctttctcatttatgaaatgg
cttggggtggacattaattttgttgatgcacctatttcaaggcactttcccatgaaggct
gagaagccagttaacgtcagatacttagaatccctgctacattacaagttcaataatcct
tctctgcttgttgaagcgctaactcatggatcttacatgctacctgagattccacgatgc
tatcagcgcttggaatttcttggagatgcagtgctagattatgttgttacaacacatctc
tatttccaatatccaggactaactccgggactaattactgatttgaggtctgcctcggta
aacaatgaatgttatgctctatctgcagttaaggcttgcctgcacaagcacattcttcat
gactcgcaagatctgctaaggcatatatttagtactgttgaggatttcaagaaattggac
cttgtgtccacattcggatgggaggttgaagctactttcccaaaggtgcttgcagatctt
attgagtcccttgctggtgcgatctttgttgattctggtttcaacgaagacactacattt
cagagcatacgacctcttttggaaccgttgattacacctcaaacactaaaactccatcca
gcaagagagttaagtgaactatgtgaccagaaaggttatataaagaagaagaatgtcgac
tttcgtgagaatggtatagtatatattacagtagaggttgaagcaaatggtgctattcac
aaggggacacactcgggacgaaacgaaaaaattgccacgaaggtggctagcaaaaaagtg
ctcaagtctctcaaagaatatccatacaatgcatag
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