Solanum stenotomum: 125846527
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Entry
125846527 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sstn03009
]
125846527
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125846527
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125846527
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
125846527
NCBI-ProteinID:
XP_049381943
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All DBs
Position
12:complement(28166673..28174423)
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AA seq
587 aa
AA seq
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MNKEGRVEEEEEEEQTFEELGLDPRLIRALTKKTIDKPTPIQRVAIPLILEGKDVVARAK
TGSGKTFAYLLPLLHKLFTQSSSVKNLAPTALILVPTRELCQQVCSEANSLIELCRVQLR
LVQLTSSMSVSELRTTLAGPPEIVISTPACIQTCLSNGVIQAKAVQDSLSILILDEADLL
LSYGYEDDLKALTSHVPRRCQCLLLSATSSSDIEKLKKLILHNPYILTLPEVGETKDDII
PKNVQQFYISCAARDKLVHILALLKLELVQKKVLIFTNSIDMSFRLKLFFEQFGIKSAVL
NAELPQSSRLHILEEFNAGLFDYLIATDESQSEGKEQVDDQNGSERKKSKKHRKHKLDAE
FGVVRGIDFKNVHTVINYEMPQTAAGYVHRIGRTGRAYNTGASVSLVSDEETEIFEEIKS
LLGENEDKVSQFIAPFPLLSKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSQK
LKAHFQDNPKDLDLLKHDKMLSKKAPAPHLRDVPDYLLDPTTQEASKIVKLARAAMGNTN
PSRGKGSKGRFKRSRDPLKTFSAEAPKRAGKGGMKRKVKDTDNGHKQ
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagaaggaagagttgaggaggaggaagaagaagaacaaaccttcgaagaattg
ggacttgaccctcgtctaatccgtgctttaaccaagaaaactatcgataaaccaactcca
attcagcgagttgctattcctctaatcctcgaagggaaagatgtggttgctcgagctaag
actggttctggaaagacatttgcttatctccttcctttacttcacaagctttttactcag
tcatcttcagtcaagaatcttgctcctactgcattgattcttgtacctacaagggaattg
tgtcaacaggtttgttcggaggctaattcgttgattgaactatgtagagtgcaattaagg
cttgtccaattgacaagttctatgtctgtttctgaattgagaactacattggcggggcct
ccggaaattgttatatctactcctgcttgtatacagacatgcttgtcaaatggagttatt
caagcgaaagctgttcaagattctctgtccattctcattctcgatgaggcagatcttctt
ttgtcatatggatatgaagatgatctgaaagctcttacatctcatgtaccaagacgttgc
cagtgccttctgttgtctgcaacctcaagttctgacattgaaaagctgaagaagcttatt
ttacacaatccctacatcctaaccttgcctgaggtgggagaaacaaaggatgacattatc
ccaaaaaatgttcagcaattttatatttcttgtgctgctcgtgataagcttgtccatatc
cttgccctcttgaagcttgagttggttcagaaaaaagtcttgatatttacaaattcaatt
gacatgagtttcagactcaaactattctttgagcagtttgggatcaagtctgcagtgtta
aatgctgagctgcctcagagttctcgtctacacatccttgaggaatttaatgctgggcta
tttgattacttgattgcgactgatgaaagtcaatcagaaggaaaggaacaggttgatgat
caaaatggcagtgagcgaaaaaaatcaaaaaaacatcgaaagcataaattggatgcagag
tttggtgtggtcagagggatagacttcaaaaatgtgcatactgtgataaattatgagatg
cctcaaacagctgcaggctatgtacatcgaattggacgtactggaagagcatataatact
ggagcatctgtctctcttgtttctgatgaagagacagaaatatttgaagagattaaatct
ttactgggggaaaatgaagacaaggtgtcacagtttattgccccattcccattgctgagt
aaaaatgcagtggagtctttgcgttaccgagctgaggatgttgcaaggagtgttacaaaa
attgcggtaagagaatcacgggctcaggatctgaggaatgagattcttaattctcaaaaa
ttgaaggcacattttcaagataatccaaaagacttagatcttttgaagcatgataagatg
ttaagcaagaaagcacctgccccacacctacgtgatgtacctgactacctattggatcca
acaacacaagaagctagcaagattgtgaagctggccagagctgcaatgggcaatactaat
ccatctcgtggcaaaggatcaaagggaaggttcaaaagaagcagagaccctcttaaaaca
ttttcagctgaggcacctaagcgagcagggaaaggtgggatgaagagaaaggtaaaagat
actgataatggccataaacagtaa
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