Solanum stenotomum: 125846559
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Entry
125846559 CDS
T08385
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
sstn
Solanum stenotomum
Pathway
sstn04120
Ubiquitin mediated proteolysis
sstn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125846559
04120 Ubiquitin mediated proteolysis
125846559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125846559
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125846559
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
U-box type E3
125846559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF2730
Motif
Other DBs
NCBI-GeneID:
125846559
NCBI-ProteinID:
XP_049382034
LinkDB
All DBs
Position
12:47483263..47492072
Genome browser
AA seq
1040 aa
AA seq
DB search
MATSKSQRTPAEIEDIILRKILLVSLVDSMENDTRVVYLEMTAAEILSEGKELRLSRDLM
ERVLIDRLSGNFVSAEPPFQYLVNCYRRAHEEGKKIASMKDKNVRSEMELVVKQVKRLAV
SYCRIHLGNPDMFPNWDMAPANVSLLLPLLFSEVSSSVDVFGGSSGSGGVSSPPGFLDEL
LKDADFDSMDPILKQLYEDLRGTVLKVSALGNFQQPLRALLFLVKYPVGAKCLVNHPWWI
PNSVYMNGRVIEMTSILGPFFHVSALPDHTIFKSQPDVGQQCFSESATRRPADLLSSFTT
IKTVMNNLYDGLAEVLMSLLKNSTIRENVLGYLAAVINKNSSRAQLQVDPLSCASSGMFV
NLSAVMLRLCEPFLDANLTKRDKIDPQYVFSSTRLELRGLTALHASSEEVSEWINQNNPG
KVDVAKEGSDGENRLLASQEATSSGNDSGGPSILHYNNPISSSSEKAKYPFICECFFMTA
RVLNLGLLKAFSDFKHLVQDISRSEDNLSTMKTMLEQTPSPQLQQEIARLEKDLESYSQE
KLCYEAQILRDGGLLQRALSFYRLMVVWLVELVGGFKMPLPSPCPMEFASMPEHFVEDAM
ELLIFASRIPRALDGVLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRRSGSTA
TSTLFEGHQLSLEYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRN
AWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQER
QERTRLFHSQENIIRIDMKLANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLV
GPQRKSLSLKDPEKYEFRPKELLKQIVKIYVHLARGDKEKIFPAAIIRDGRSYSDQIFSA
AADVLRRIGEDMRIIQEFIDLGAKAKIAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVI
LPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDTELKAKIEEFIRSHELKKPGED
LNLQHTKTTIQTTDTLNLIE
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttctaaatcacagaggacgccggcggagatcgaggatataattcttcggaaa
attttacttgtatctctagttgattcaatggaaaatgatacacgcgttgtgtatttagag
atgacggcggccgagattttgagcgagggtaaagaattaaggttgtctagggatttgatg
gagagggttttaatcgatcgactttctggtaattttgtatccgcggaaccaccttttcag
tatttggtcaactgttaccgtcgggcacatgaagaagggaagaagattgcgtcgatgaag
gataagaacgttaggtctgagatggaattggtggttaagcaagtaaagagacttgctgta
tcatactgtaggatacatttaggaaatcctgatatgtttcccaattgggatatggcacca
gcaaatgtatctctgttgcttcctttgttgttttctgaggtttcaagttctgtggatgtg
tttggtgggagtagtggtagtggaggagtgtcaagtccacctgggtttttggatgagtta
ttaaaggatgcggattttgatagtatggacccaatactgaagcagttgtatgaggatttg
agagggactgtgctaaaggtttcagctttgggtaattttcagcagcctcttagagcttta
ttatttttggttaagtatccagtaggtgccaagtgtcttgtgaatcatccttggtggatt
ccaaatagtgtttatatgaatggaagagtaatcgaaatgacaagcattttgggtcctttc
tttcatgtcagtgctttacctgatcatacaatcttcaagagtcagccggatgttggccag
cagtgtttctcagaatcggccacacgtcgtcctgctgatctcttgtcttctttcacaaca
atcaaaactgttatgaataacttgtatgatggcttggcagaagtgcttatgtctcttctg
aaaaattcaactattcgtgaaaatgtccttggatatcttgcagcagttataaacaaaaat
tcgtcaagggcacagttgcaggttgatccattatcttgtgctagttcaggcatgtttgta
aatctcagtgccgttatgcttcggctctgtgaacctttcttagatgccaatttgacaaaa
cgggacaagattgatccccaatatgtgttttctagcacccgcctggaactgagggggttg
actgctctgcatgcatcatcagaagaagtctctgaatggataaatcaaaataatcctgga
aaagttgacgttgctaaagaaggcagtgatggagaaaatcggttgttggcatctcaggaa
gctacaagctctgggaatgattctggtggaccttcaattctccactataacaacccaata
tcaagtagtagcgagaaagctaaataccccttcatatgtgaatgcttcttcatgactgca
cgggtgctcaacctgggcctcctaaaagcattttcagattttaagcatcttgttcaggac
atttcaagatccgaagataatttgtctaccatgaaaaccatgctagaacaaactccctcg
ccacagttgcagcaggaaatagctcgcttggaaaaagatcttgaatcgtattcacaggag
aaattatgctatgaagcccagatactgagggatggagggcttctccagcgtgcattatcc
ttctacaggttgatggttgtttggctggtcgagcttgttggtggttttaagatgccttta
ccttccccttgccctatggagtttgcatctatgcctgagcactttgttgaagatgccatg
gaactgctaatttttgcttctcgaattcccagagctttggatggtgtcttgctggatgac
ttcatgaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttacctt
agagcaaagatggttgaagtcctaaactgttggatgccccgcagaagcggctctactgca
acgtctactttgtttgaagggcatcaactctctctggagtaccttgtgaaaaatcttttg
aagctttatgttgacattgaatttacaggttcccacacacagttctatgataaatttaat
atccgccacaacattgctgaactgcttgaatatctttggcaagttccaagtcaccggaat
gcatggagacagattgccaaggaggaggagaagggtgtttacttaaatttcttaaacttc
ttgattaatgatagcatctatcttctcgatgaaagtcttaataaaattcttgaactaaaa
gagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaagg
caggagagaacccgtctgttccattcacaagagaatataattcgaattgatatgaagttg
gcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttctt
cttcctgagatggtggaaagagttgctagcatgttgaattacttcttactacagctggtg
ggtccacaaagaaaatctcttagcttgaaagaccctgaaaagtatgaatttcgtccgaaa
gagttgctgaaacagattgtgaaaatatatgtgcatttggcaagaggagataaggagaaa
atttttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgct
gcagctgatgtccttagaagaattggtgaagatatgaggatcatacaagagttcatcgac
cttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttgga
gacattcctgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcatt
cttccttcttcgaggataacagtggaccggcctgttattcagcggcaccttcttagtgat
agtacagacccatttaaccggtctcatctaactgcggacatgttgattcccgacaccgag
ttgaaggcgaaaatcgaagagttcatccggtcccatgaactgaagaagcctggggaggat
ttgaatttgcaacacacaaaaacaaccatacaaacaactgatactttaaatttgattgag
tag
DBGET
integrated database retrieval system
