Solanum stenotomum: 125846560
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Entry
125846560 CDS
T08385
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
sstn
Solanum stenotomum
Pathway
sstn03420
Nucleotide excision repair
sstn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125846560
09124 Replication and repair
03420 Nucleotide excision repair
125846560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125846560
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125846560
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
125846560
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
125846560
TCR (transcription coupled repair) factors
Cul4-CSA complex
125846560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
125846560
NCBI-ProteinID:
XP_049382035
LinkDB
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Position
12:complement(6116507..6137879)
Genome browser
AA seq
1095 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD
VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSST
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNYSHIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDSNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVP
VEELMKRVEELTRLH
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtatggaactacgtggttacggctcacaagccaacaaatgttacacattcctgt
gttggcaatttcactggtcctcaagagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcactccccaaggtttacagtgcatttgtctgcagccaatgttagat
gtgccgatatatgggagaatcgcgacacttgagcttttccgtcctcacggtgaaacacaa
gatcttctcttcatcgcaacagagcgatataaattctgtgtccttcaatgggacactgag
gcatctgaagttatcacaagagcaatgggagatgtgtcagaccgaataggccgtcccaca
gataatggtcagattggtataattgatccagactgcagattgatcgggctgcatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcttttaac
atcaggctcgaggagcttcaagttttagatattaaattcttgtatggttgcccgaagcct
acaattgttgttctatatcaggataacaaggatgcccgacatgtcaaaacatatgaggtg
tccttgaaagataaagattttattgaagggccatgggctcagaataatcttgataatgga
gcttctttgctaataccagtacctccgccactgtgtggtgtattgattattggagaagaa
accatcgtttattgcagcgcttcagcttttaaggctatcccaattagaccttctatcaca
agagcatatgggcgggttgatgctgatggttctcgatatttgcttggggatcataatggg
cttcttcacctacttgttatcactcatgagaaggagaaagttaccggactcaaaattgag
ctgctgggagaaacttctattgcatcaaccatatcatacctagacaatgcttttgtcttc
attggctcaagctatggagattcacagcttgtaaagctcaatctccagcctgacaccaaa
ggttcttatgtggaagttctagagagatatgtcaatttgggacctattgtggacttctgt
gttgttgatctggagaggcaaggtcaaggtcaggttgtaacttgctctggagcctataag
gatggatcgcttcgtattgttcgaaatggaattggcataaatgaacaggcgtctgtggaa
ctacaagggatcaaaggaatgtggtctcttagatctgctactgatgatccatatgacaca
ttcttggttgttagcttcattagtgagacacgcgttttggctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcatgat
gctgtatacaaccagcttgttcaggttacttcaaattctgttagactggtcagttctacc
tctagagatctgaaaaacgaatggtttgccccagccggctactcggtcaatgttgcaact
gctaatgccactcaggtactattggctactgggggtggccatctggtatacctagaaatt
ggtgatggggtgttgaatgaagtaaaatatgccaagttggattatgacatctcgtgcctg
gacataaatccaattggtgaaaatccaaactacagtcacattgcagcagttggaatgtgg
acagacataagtgtcaggatatattcacttcccgacttgaatctcattacaaaggagcag
ctaggaggggagattattcctcgttctgttctgatgtgttcctttgaagggatatcttat
ctactatgtgctttgggagatggccatctcttgaattttgtattgagcatgagtactggt
gagctgacagataggaaaaaagtgtctcttgggacacagcccataacacttcgtacattc
tcatctaaagatactacacacgtctttgctgcctccgacaggcccacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatctaaaagaagttagtcatatgtgccca
ttcaatgttgcagcttttccagacagccttgcaatcgctaaagaaggtgagttaacaatt
ggcactattgatgaaattcagaagcttcacatccgttcaataccccttggggagcatgca
cgtcgcatcagccatcaagagcagacccgaacatttgctctatgcagtgtgaagtatact
cagtcaaatgcagatgatcctgaaatgcattttgtccgcctgttggatgatcagacattt
gagttcatatcaacgtatccccttgaccaatttgaatatggctgttccatactaagctgc
tccttttctgatgatagtaatgtgtattattgcattggaactgcatatgtgatgccagag
gaaaatgaacctaccaagggccgaattttagtttttatagttgaagatggaaagctccaa
ctaattgctgagaaggaaactaagggagctgtctactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcaattgtacaagtgggcttcgcgtgaggatggt
ggcagccgagaattgcagacagaatgtggacaccatggtcatatattagctctttatgtt
caaacgcgtggggatttcattgttgttggtgatttgatgaaatccatttccctgctgatt
ttcaagcatgaagagggtgctatagaggagcgagcccgagactataatgcaaattggatg
tcagctgttgagattctcgatgatgacatttatcttggtgctgagaataactttaacctt
ttcacggtcaggaaaaatagtgaaggtgctacagatgaggagcgcagccgtcttgaagtg
gttggtgaataccatcttggtgaatttgttaataggtttagacacggttcgcttgtcatg
cgactaccagattcagacgttgggcagatacccaccgtcatatttggcacagtgaatggt
gttataggggtcattgcatcactacctcatgatcaatatttatttttggaaaagctgcag
acaaacttacggaaagtgataaagggtgtgggaggtctgagccacgagcagtggaggtcg
ttttacaacgagaagaaaactgtagatgctaaaaactttcttgatggagatttgattgaa
tcattcctagatcttagcaggaatcggatggaagagatttctaaagcaatgtcagttcca
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag
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