Solanum stenotomum: 125846597
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Entry
125846597 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125846597 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125846597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125846597
Spliceosome [BR:
sstn03041
]
Complex C
Other components
Step II factors
125846597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
125846597
NCBI-ProteinID:
XP_049382089
LinkDB
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Position
12:complement(37071175..37075870)
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AA seq
580 aa
AA seq
DB search
MDLLRSYAEDDEIANPNSQSSPDSSPIRMLPSKSAAPKVDDTMLALTVAGEAARAQSKPL
DPTQHLVGFNPTYEQLWAPICGPAHPYAKDGLAQGLRNHKLGFVEDASIEPFVFDEQYNT
FQKYGYAVDPSENSYIGDLEKMKECDAISVYNIPQHEQKKRKLEKKKEKMEEEEGDEQDV
DMTEVENPSTDTWLMKNRKSPWAGKKEGLQVELSEEQKKYAEEYAKKKGEERGGDKDKAE
PMVEKSTFHGKEEKDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK
HGHLILSAGMDTKVKIWDVYNSGKCMRTYMGHTKAVRDIWFSNDGSKFLTAGYDKYIKYW
DTETGQVIQTFTTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQITQEYDQHLG
AVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISPHPNGNWIAAQ
SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVFSGDGEGRCWFWDWKS
CKVFRTLKCHDGVCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggacctattgcgatcctacgccgaggacgatgaaatcgctaaccctaattcccaatct
tcgccggattcttctccaatccgaatgcttccttctaaatccgccgcccctaaagtcgac
gacaccatgctagccctaacagtcgccggcgaagctgcaagagctcaatccaaacccctt
gatccgacccagcacctcgttggattcaacccgacatacgaacaactatgggcaccaatt
tgcggtccagctcacccgtacgcaaaggacgggttagctcaaggactcagaaatcacaag
ctagggttcgttgaggacgcgtccattgaaccctttgtatttgacgagcagtacaatact
tttcagaagtatgggtatgctgttgatccctctgaaaatagctacatcggtgatttggaa
aaaatgaaggaatgtgatgcaatttctgtgtataacataccacagcatgaacagaagaag
aggaagttagagaaaaagaaggaaaaaatggaggaggaggagggtgatgagcaggacgtg
gatatgacggaagttgaaaatccgtccacagacacatggttgatgaagaacaggaagagt
ccatgggctggaaagaaagaagggttgcaagtggaattatctgaggagcagaaaaagtat
gctgaagagtatgctaagaagaagggtgaagaaagaggtggtgataaagataaggcggag
cctatggttgaaaagagcacatttcatggtaaagaggaaaaggattatcagggcaggtct
tggattgctccaccgaaggatgcaaaggctgctaatgatcattgttatataccaaagaga
ttagttcatacttggagtggacacacgaaaggggtttcagctattaggtttttccctaag
catggtcatttgattttgtcagctgggatggatacaaaggtgaagatttgggatgtttac
aattccggtaaatgtatgaggacttacatggggcatacaaaggcagtgagggatatttgg
tttagcaatgacgggtcgaagtttttgacagctggatatgataagtacattaagtattgg
gatacagaaacaggacaagtaattcaaaccttcacgacaggtaagataccctatgtggtg
aggcttaatcctgatgaggataagcagaatgtacttttggctggtatgagtgataagaag
attgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggg
gcagttaatacaattacctttgtggataataataggaggtttgtgacctctagtgatgat
aaatcactacgtgtttgggaatatggtattccggttgttattaagtatataagtgaaccc
catatgcattccatgccatctatttcgccccacccaaatgggaattggattgcagcacaa
agtttggataaccagattcttatctatagtacgcgagagagatttcagctgaataaaaag
aaaagatttgctggacacattgtcgctggttatgcctgccaggtcaatttctcacctgat
ggacggtttgtcttctcaggagatggtgaaggcagatgctggttttgggattggaaatcg
tgtaaggtcttcagaactctcaagtgtcatgacggggtctgtattggtgcagagtggcat
cctctggaacaaagtaaagttgctacttgtggctgggatggtttgatcaaatactgggac
tag
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