Solanum stenotomum: 125846628
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Entry
125846628 CDS
T08385
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125846628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125846628
03036 Chromosome and associated proteins [BR:
sstn03036
]
125846628
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125846628
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125846628
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
125846628
Noncanonical PRC1 (PRC1.1)
125846628
Noncanonical PRC1 (PRC1.3/1.5)
125846628
Noncanonical PRC1 (PRC1.6)
125846628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-UDP
zf-rbx1
zf-RING_6
RAWUL
zf-Nse
TRAF3_RING
zf-C3HC4_5
ZNF512_C2HC
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
125846628
NCBI-ProteinID:
XP_049382139
LinkDB
All DBs
Position
12:complement(36126764..36134295)
Genome browser
AA seq
452 aa
AA seq
DB search
MPAQKRPYETSPTPPPPDEKDDDSLQGNQNHDEEADDSGGEDSDGTTCSSGGEKDEFITV
RLSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSL
RDDPNYDALIAFLYPDIDKFEEEEFAFHEEEKALNKQIQASIAQTSQRQSEALGRKRSAR
AAAAAFTRRSQGNYRNLRGRRNYQGAEHHISDEEEDGNHDVGKDSSSADERSIEVKPKRQ
KKRAGRPSQASAASDENDAETNQESFGACSGLIRCSEILAWGKGGMRSNNRHGGLGGGIG
KVSRNSRVSKLIASLSRSDEYEGKLDARLMLVSFSEEDIPSLQRPYLSCQPTMEVKHLRQ
YVAQQTSIEVGEIDIVLIKEKNPTDNPSSSDIMAISKPIVGDPSKAEIQTVEEHQTLGEI
QETFGLNQRNLILAYRRKAKNGTDHDEGKVTM
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcacagaagcgtccgtacgaaacttctcctactcctccgccaccggacgaaaag
gacgatgattcattacaaggtaatcaaaatcacgacgaagaagccgatgacagcggcggc
gaagattcggatggaactacttgttcgagcggcggggagaaagacgaatttatcactgtg
agactttcagaaattcgcaaagaagtacagtgtcctatatgtttaggcatcatacgaaag
accagaacagttatggaatgtttgcatcgattttgcagagaatgcattgacaagtctatg
cgaatggggaacaatgagtgtcctgcttgtcgtacccactgtgctagtcgccgttctctg
agagatgatccgaactatgatgctctaattgcatttctatatccagatattgataaattt
gaagaggaggaatttgcttttcatgaagaggagaaagctttaaataagcagatacaagct
tcaatcgcacagacgtcacagcgacaatccgaagcactgggaaggaaacggtctgcaaga
gcagcagcagcagcttttactaggagatctcagggaaactatcggaatttaaggggaaga
agaaattatcagggtgctgaacaccatatatctgatgaggaagaagatggtaatcatgat
gttggcaaggattcttcctctgctgatgagcgctcgatagaagtcaaaccaaagcggcag
aaaaagagggcaggacggccttctcaggcctcagcagccagtgacgaaaatgatgcagaa
acaaaccaagaatcatttggtgcatgtagtggacttattcgctgttcagagattcttgcc
tggggaaaaggtggcatgcgaagtaacaacaggcatgggggtcttggtggaggcattggc
aaggtctccaggaacagcagagtctcgaagctaattgcttctctatctcgttcagatgaa
tatgaagggaagttggatgccagacttatgcttgtttccttttccgaggaggatatacca
agtttgcaacgaccttaccttagctgccagccaactatggaagttaaacatttaagacag
tatgtagctcagcagacttccatagaagtcggggaaattgacatagtgctgataaaagag
aagaaccccactgacaacccttcaagttctgatatcatggccatttccaaacccattgtt
ggagatccgtctaaagcagaaatccagactgtggaagagcatcagacattgggggaaatc
caagaaacgtttggtttgaaccagcgtaatctgatcctggcataccgacgaaaagcaaag
aatgggacagaccacgatgaagggaaggtgaccatgtaa
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