Solanum stenotomum: 125846660
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Entry
125846660 CDS
T08385
Name
(RefSeq) vacuolar protein sorting-associated protein 35A
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
sstn
Solanum stenotomum
Pathway
sstn04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125846660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125846660
Membrane trafficking [BR:
sstn04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
125846660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
125846660
NCBI-ProteinID:
XP_049382179
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Position
12:41271633..41280543
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AA seq
790 aa
AA seq
DB search
MITNGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKY
YELYMRAFDELRKLEIFFREETNRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDILKDLVEMCRSIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVEFVL
QNFTEMNKLWVRMQHQGHAREKEKREKERSELRDLVGKNLHVLGQIEGIDLDLYKDMVLP
RVLEQVVNCKDEIAQGYLMDCIIQVFPDEYHLQTLETLLGACPQFQPSVDIKTVLARLME
RLSNYAALSAEVLPEFFQVEAFANLNSAIGKVIEAQEDMPIAGVVTLYSSLLTFSLHVHP
DRLDYVDQILGACVQKLSGKGKLKDNKETKQIVALLSAPLEKYKDIDTALKLSNYPRLME
NLDDSTSKEMANVLVQNILKNKTCISTAEKVEALFELMKALIRDLDEGVDDELDEDDFQE
EQNSVAQLIQMLHNDDPEEMLKIICAVKKHILTGGPKRLPFTVPPLIFNSLKFVRRLHSH
DENVPEEESSAMPKKFFQILNQIIEALSIVPVPELALKLYLECAEAANDSDIEPVAYEFF
TQAYILYEEEISDSKAQVTAIQLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDSIKDGERVLLCLKRALRIANAAQQMSNATRGSSGSVLLFIEILN
KYLYFFEKGVSQINVASVQSLIELITTEMQSENTTADPAADAFFASTLRYIQFQKDKGGA
VGEKFESINS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgataactaatggagtcgaagacgaagagaagtggcttgccgctgggatcgccggcctt
cagcagaacgcattttacatgcatcgcgctcttgactcgaacaatctgaaagatgcattg
aaatactcagctcagatgctctcagagctccgaacttccaagctttctcctcacaaatac
tatgagctatatatgcgcgcatttgatgaattgaggaaattagagatcttcttcagggag
gagacaaatcgtggctgctccattgttgagttgtatgagctcgtgcagcacgctggcaac
attttgcccagattgtatctcctttgtacagtgggttcagtgtatattaaatcaaaggag
gctcctgccaaggatattctcaaagatctggtggaaatgtgccgtagcatacaacatcca
ttacgtgggctcttcctaaggagttacctttcacaagtcagtagggataaattgcctgat
ataggatctgagtatgaaggggatgctgacactgtcatggatgcagtagaattcgtgctc
caaaatttcacagaaatgaacaaactttgggtgcgaatgcaacatcagggacatgcacgg
gaaaaggaaaaacgtgaaaaagaaaggagcgagcttcgtgatcttgtggggaagaacctg
catgttctaggtcaaattgagggcattgaccttgatttgtacaaagatatggtgcttcca
agagttttagagcaggttgtcaattgtaaagatgagattgcacagggatatttgatggat
tgcatcattcaagtcttccctgatgagtaccacttacaaactcttgaaacattacttggt
gcttgcccccagtttcagccatctgttgatatcaagacagtgcttgctcgtctgatggaa
aggctttcgaactatgctgctttaagtgcagaagttttacctgagttcttccaggttgaa
gctttcgcaaaccttaatagtgccataggcaaggtgatagaggctcaagaagacatgcct
attgccggagtggtgacattgtattcatcccttttgacattttctcttcatgtccaccct
gatcgccttgattatgtagatcagattctgggtgcatgtgtacagaaactttctggaaaa
ggaaagctcaaagacaacaaagaaacaaaacagattgtggccctactaagtgctcctctg
gagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggag
aatcttgatgattcaactagtaaagagatggctaatgttttagttcaaaatattttgaaa
aataagacttgcatttcaactgctgaaaaggttgaggcactttttgagttaatgaaagca
ctgattcgagatttggatgagggtgttgatgatgagcttgatgaagatgatttccaggaa
gagcagaactctgttgcgcagcttattcaaatgcttcacaatgacgatcctgaagagatg
ctgaagattatttgtgctgtgaagaagcacattttgacaggagggccaaagagacttcct
tttaccgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcat
gatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctg
aatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagttgtac
ctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttc
actcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgca
atacaattgataataggaactcttcagagaatgcacatctttggtgttgagaacagggac
acgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgt
agagctgtgtatgcttgttcacatcttttctgggttgacgatcaggacagtatcaaggat
ggagaaagggttttgctttgcttaaagcgggccttaagaattgcaaatgctgctcaacaa
atgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaac
aagtatctatatttctttgagaaaggggtctcacagattaatgttgcctctgtccagagc
cttattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagca
gatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgca
gttggggagaaattcgagtccatcaactcataa
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