Solanum stenotomum: 125846957
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Entry
125846957 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125846957
KO
K24755
WD repeat-containing protein 76
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125846957
03036 Chromosome and associated proteins [BR:
sstn03036
]
125846957
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125846957
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125846957
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
125846957
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
125846957
DSBR (double strand breaks repair)
Other DSBR factors
Others
125846957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
Beta-prop_EIPR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
125846957
NCBI-ProteinID:
XP_049382628
LinkDB
All DBs
Position
12:complement(3831552..3834727)
Genome browser
AA seq
474 aa
AA seq
DB search
MAAKKLTDYERRRIENIKRNEEMLASLQIQSRISQLSAVTKRPRAQGKSYQRSPQKKQKS
NSPVVLRRSLRSQGIPPDSSTASDPKDNFDDNSQPTDKKSPSEPIPISMRDAYNGDIDIP
NKKLIETIKGFDDESMDKNSVLGDRREKGKASGTVNLESLRLEPDNIARIVPGRILNVRF
FPTNNVRMVAVGNKYGNIGFWNVDAPQEDGDVIFLYRPHSGPVSGILVDPFSVSKMITSC
YGGFIRVMDIEKEMFDLAYMSEHPIFSISQRPHDMKSIYYGEGKGGLGIWDLRAGKSSAL
WNLHEDRINTIDFTSENCNIMATSSTDGSACIWDLRKVGAHKPKSLQTVFHKRAVHSAYF
SHSGRFLATTSIDNNVGVLSGANYEDTCMISHYNHTNRWISSFRGIWGWDDSYIYIGNME
RGVDVISVADKKLDFTLRSEHMTAIPCRFDAHQKEVGMLAGATSGGQVYIWTAS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaagaaattgacggattacgaacggcggaggattgagaatataaagcgcaat
gaagaaatgcttgcctcccttcagattcagtcccgaatttctcaactttctgcagtaaca
aagcgtccaagagctcaaggcaaatcatatcagcgaagtccacagaagaaacaaaagtct
aactcaccggttgtgctgcgacggtctctcaggagtcaaggtattccaccggattcttct
accgccagtgacccaaaagataattttgatgacaactcacaacctacagacaaaaagtca
ccgtcagaacctattcccataagtatgagagatgcatataatggcgacattgacatccca
aataagaaattgattgaaacaataaagggttttgacgatgagagcatggataaaaattct
gttttaggtgacaggagagagaaaggaaaggcttctggtacagttaatttggaatcattg
aggttggaaccagacaacatagcacggattgtgccaggaagaatattaaatgtgcgtttt
tttcccaccaacaatgttcgaatggttgctgtagggaacaaatatggcaatataggtttc
tggaatgttgatgctccacaggaggatggagatgtgatctttttgtaccgtcctcattcg
gggccagtttcaggaatacttgtggaccctttttctgtgtcaaagatgatcacttcttgc
tatggtggatttattagggtaatggacattgaaaaggaaatgtttgatttggcatatatg
agtgaacatcccatattttccatatcacagagaccacatgatatgaagtccatatattat
ggtgaaggcaaggggggacttggtatttgggatctaagggcaggaaaatcttcagcattg
tggaatttgcatgaagataggatcaacacaatagattttacctctgaaaactgtaatatt
atggctactagttctacagatggtagtgcatgcatttgggatttgagaaaagttggtgca
cataaaccaaaatctttacaaactgtcttccacaaaagagcagtacactcggcttacttt
tcacattcaggaaggtttcttgccacaacaagtattgataataatgttggtgtgttgagt
ggcgctaattatgaagatacatgtatgatctcccattataatcacacaaacagatggatt
tcctcattcagaggaatatggggttgggatgattcttacatctacattggtaatatggaa
agaggagttgatgtaatctcagtagctgacaagaaacttgattttaccttaagaagcgag
cacatgactgctattccatgccgttttgacgcacatcaaaaagaggttggaatgcttgca
ggggctacaagtggtgggcaggtatatatctggacagcatcttaa
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