Solanum stenotomum: 125847097
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Entry
125847097 CDS
T08385
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125847097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125847097
03009 Ribosome biogenesis [BR:
sstn03009
]
125847097
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125847097
Spliceosome [BR:
sstn03041
]
Complex A
U2 snRNP components
U2 related factors
125847097
Complex B
125847097
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125847097
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
90S particles
Helicases
125847097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
AAA_30
T2SSE
FtsK_SpoIIIE
AAA_7
PhoH
TsaE
AAA_29
NACHT
Motif
Other DBs
NCBI-GeneID:
125847097
NCBI-ProteinID:
XP_049382761
LinkDB
All DBs
Position
1:complement(24621099..24626769)
Genome browser
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAAKKLNGGLNGGNSLTASINKWNGKPYSQRFYDILEKRKTLP
VWHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPRR
VAAMSVSRRVAEEMDVVIGEEVGYSIRFEDCTSAKTVLKYLTDGMLLREAMADPLLERYK
VIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGR
LHPVEIFYTQDPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKITKEIGNM
GDQVGPVKPVPLYSTLPPAMQQKIFEPAPPPVVEGGPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNM
TRLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKN
RFGHIDGDHLTLLNVYHAYKQNQEDPQWCYENFINQRALKSADNVRQQLSRIMARFNLKL
CSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDESK
SKK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgagcggaagaggaaggtgagcttgtttgatgtggtggatgactcggccgcg
aagaagctcaatggaggcttaaatggtggaaacagcttgacggcttcgatcaacaagtgg
aatggaaagccttactcacagagattttatgatattttggagaagaggaagactcttcca
gtttggcatcaaaaggaggagttcttacaggctttgaaatctaatcaaactcttatcttg
gtcggtgaaactggtagtggtaaaaccactcagattccacagtttgttttggatgctgtt
gaagtagagacagctgataagcgcaggaaatatatgataggttgcactcaacctcggagg
gtggctgcgatgtctgtctctcgtcgtgttgctgaagagatggatgttgtaattggggaa
gaagttggatatagcattcgttttgaggactgcactagtgctaaaactgttttaaaatac
ttaacagatggtatgcttttaagagaagcaatggcagatcctctattggaacgctacaaa
gtaattattcttgatgaagctcatgaaagaactttggcaacagatgtcctgtttgggctt
ttgaaggaggtgttgaaaaatagaccagacctaaagctagttgttatgagtgccacactt
gaagcagagaagtttcagggttacttctttggtgcacctctcatgaaagttcctggaagg
ctccatccggtggaaattttctacactcaggatcctgagagagactatcttgaggctgcc
attcggactgttgtgcagatacacacatgtgaacctcctggtgacattcttgttttcctc
accggagaagaggagattgaagatgcatgtcgcaaaatcacaaaggaaattggtaatatg
ggtgatcaagtaggccctgttaaaccggtgcctctttattctacacttccccccgctatg
cagcaaaagatatttgaaccggccccaccaccagttgtggagggtggtcctcctggcagg
aagatcgttgtgtcaaccaacattgcagaaacatctttgacaatagatggcattgtttat
gtcatagatccaggatttgctaagcaaaaggtttataatccaagggtgcgtgtggaatct
ttgttggtgtctcctatttcaaaggccagtgcacaccagagatcaggacgtgctggaaga
acacagccaggaaaatgctttagactttacacggagaaaagcttccataatgaccttcaa
ccacagacatatccagaaatactacggtcaaatttggctaatacagttctaactctgaag
aagctaggtattgatgacctggttcattttgattttatggatcctcctgcccccgagacg
ttgatgagagcactagaggttttaaattacttgggagcattggatgatgatggaaacatg
acccggttgggtgagataatgagtgaatttcctctcgaccctcagatggggaaaatgctt
gttgtcagcccagaattcaactgctccaacgagatcctctcaatatctgccatgctatca
gtacccaattgctttgtccggcctagggaggctcaaaaagctgcggatgaagcaaagaat
cggttcggtcacatagatggggatcatttgacgttgctgaatgtgtatcatgcctacaaa
caaaaccaggaggatcctcaatggtgttatgagaacttcatcaatcagagggcactcaaa
tcagctgacaatgtgaggcaacaactttctcgcataatggccaggttcaacctcaagtta
tgcagcacagacttcaacagtcgcgagtactatgtgaacataagaaaggctatgttagct
ggatatttcatgcaggttgcacacctagagcgtactgggcattatctaaccgttaaagac
aatcaagtggtacacttgcatccttcaaattgcctggatcacaagccagaatgggttata
tataatgaatatgtcttaacaagcagaaatttcatccgcactgtaactgatatacgtggt
gaatggttggttgatattgcaccacactactatgaccttgcaaactttccacaatgcgaa
gcaaaacgagtgcttgagcggttatacaagaagcgggagcgagaaaaagatgaaagcaag
agcaaaaaatga
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