KEGG   Solanum stenotomum: 125847444
Entry
125847444         CDS       T08385                                 
Name
(RefSeq) uncharacterized protein LOC125847444
  KO
K10756  replication factor C subunit 3/5
Organism
sstn  Solanum stenotomum
Pathway
sstn03030  DNA replication
sstn03410  Base excision repair
sstn03420  Nucleotide excision repair
sstn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125847444
   03410 Base excision repair
    125847444
   03420 Nucleotide excision repair
    125847444
   03430 Mismatch repair
    125847444
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sstn03032]
    125847444
   03036 Chromosome and associated proteins [BR:sstn03036]
    125847444
   03400 DNA repair and recombination proteins [BR:sstn03400]
    125847444
DNA replication proteins [BR:sstn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    125847444
  DNA Replication Termination Factors
   ELG1-RFC complex
    125847444
Chromosome and associated proteins [BR:sstn03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    125847444
DNA repair and recombination proteins [BR:sstn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     125847444
  Check point factors
   HRAD17(Rad24)-RFC complex
    125847444
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 CNOT1_CAF1_bind AAA_5
Other DBs
NCBI-GeneID: 125847444
NCBI-ProteinID: XP_049383018
LinkDB
Position
12:complement(42415093..42418709)
AA seq 754 aa
MEGASTYNRALQLKLSSTMRQRRSGYEPSDTETDWTLEKSPHREANGKNEKEIDLEEHEP
EEPNVAFERAKDNSSFNLSWRTNVPSSARWRSTKSPYKLRRDIEDGESPSSPKALPRSVS
TFSRRPDHSHRNVSPFQKSENRRHISPYKYAGDDHDRLFADSNRKQNQSQGNNNVHSRLG
EKSNFNRRYASAPRPDRQYKFDASKERRKANNKTQTQLPVRRLSRKERETPNKHGPMGGE
LNEMIAEAKISGSATGANHMFESTETVSPGDIFFSRDYEALNMQKITERKFDKKPQVLTD
RNVESVKTPGNFNQSGRGNLSSNTQRTISTNTFVSRQSSNLSDTSGRTTKSMKKFTANRQ
KSQSEPWFSCLKKGTCRTSRRESPEKGRPIDEDLVIAKASVVQSLRPFWADKHQPDSLEG
FTCHKQEALLLKDLVSSSEILPQIIFKGPPGSGRRTLTMAFLREIYGDAICNETRPVQVV
VPVSSSPHHIEINVQLEPNARYVIMALVKQITSEYALTPEISRVNKKADYKVIVLYDVDK
ATENIQHLVKWIMDCYSDACKLILCCEDDVAILDSVKSRSKVFEVAAPVTHEIMEVLIQI
ARKEDFELPMGFAAKIAAKSKQNLRRAIMALEACKAHNYPFAEDQPISIGWEEVVTEVAA
EILADPNQTRLFSVRRKFQKLLVEFVHPKLILLKLVEEFIKRVDAGIRREIHYWHAYYEK
RLPLGTTALLKLEEFVAKFMSIYRKNLSTRQQFL
NT seq 2265 nt   +upstreamnt  +downstreamnt
atggagggagcttcaacatataacagagctttacaactgaaactctcgtcgaccatgagg
caaagaagaagtggttatgagccatcagatacggagacagactggacattggagaagagt
ccacacagggaagcaaacggaaagaatgaaaaagaaatagatcttgaagaacatgaaccg
gaagagcccaacgtagcatttgagagagcaaaggacaatagttcttttaatttaagctgg
aggactaatgttccaagttctgctcgatggagaagtactaagtctccttataagcttcgc
agagacatcgaagatggtgaatctccttcttctccaaaggctttaccaagaagtgttagc
acattttcacgcaggcctgatcattctcatagaaatgttagtccttttcaaaaatctgag
aaccgtagacacatatctccatataaatatgctggtgatgatcatgacaggctttttgct
gattcaaataggaagcaaaatcaatcacaaggtaataataatgttcatagtagactaggg
gagaagtcaaattttaatcgcaggtacgcttctgctcctagacctgacagacaatacaag
tttgatgcttccaaggagagaaggaaagcaaataataagacgcagacgcagttgccagtt
agaagattgtcgcggaaagaaagggaaactccgaataagcatggacccatgggaggtgaa
cttaatgaaatgattgccgaagcaaagatatctggaagcgctactggtgctaatcatatg
tttgaaagcacagaaactgtttcacctggtgatattttcttttctcgggactatgaagct
ttgaacatgcagaagattactgaaaggaaattcgataaaaagcctcaggtactgactgat
agaaatgttgaatcagtgaaaacgcctggtaatttcaatcagagtggaagaggaaattta
tccagtaatactcaaagaactataagcacaaacacttttgtaagtagacagagcagtaat
ttgagtgatactagtggaaggacgaccaaaagtatgaaaaagttcaccgcgaacaggcaa
aagagtcaatcagaaccatggttttcttgtctcaagaaaggaacatgcagaacctcaaga
agagaatctccagaaaaagggcgtccgattgatgaagatttagtaattgctaaggcatct
gtagttcaaagcttgagacccttctgggctgataagcatcaacctgattcactagaggga
tttacttgccacaagcaagaagctttactacttaaagacctggtttcttcaagtgaaatc
cttccacagatcatattcaagggtcctcctggttctggaaggagaacactcacgatggct
tttttgcgtgaaatctatggagatgcaatctgcaatgaaacaaggccagtgcaagttgtt
gtaccagtaagctcaagtcctcaccatatcgagatcaacgttcagttggagcctaatgct
agatatgtgataatggctttagttaagcaaataacttcagagtatgcactgacccctgag
atcagcagagtaaataagaaggctgattacaaagtaatagttctttatgatgtggacaaa
gccacggagaacatacagcacctagttaaatggataatggactgctattcagatgcttgc
aaactcattctctgctgtgaagatgatgtagccatacttgactcagtgaaaagccgcagc
aaagtttttgaagttgcagctcctgtaactcatgaaatcatggaagttcttattcagata
gcaagaaaggaagattttgaactaccaatggggtttgctgctaagatagccgccaagtca
aagcaaaacctgcgaagagcaattatggctcttgaagcctgcaaagcacacaactatcct
tttgctgaagaccaaccaatttcaataggatgggaagaagtagtaacagaagttgcagca
gaaattctcgctgatcccaaccaaacaaggttattttctgttcgaaggaagttccaaaaa
cttttggtggagtttgttcatccaaaacttattctcctgaaactagttgaagaattcatt
aagagagttgatgctggtataagaagggaaattcattactggcatgcttattatgagaaa
aggctccctcttggaacgactgctttgttaaaattagaagaatttgtggccaaatttatg
agcatatacaggaaaaacttaagcacccgtcagcagtttttataa

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