Solanum stenotomum: 125847490
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Entry
125847490 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125847490
KO
K10756
replication factor C subunit 3/5
Organism
sstn
Solanum stenotomum
Pathway
sstn03030
DNA replication
sstn03410
Base excision repair
sstn03420
Nucleotide excision repair
sstn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125847490
03410 Base excision repair
125847490
03420 Nucleotide excision repair
125847490
03430 Mismatch repair
125847490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sstn03032
]
125847490
03036 Chromosome and associated proteins [BR:
sstn03036
]
125847490
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125847490
DNA replication proteins [BR:
sstn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125847490
DNA Replication Termination Factors
ELG1-RFC complex
125847490
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
125847490
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125847490
Check point factors
HRAD17(Rad24)-RFC complex
125847490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
COMPASS-Shg1
RuvB_N
EnY2
Rep_fac_C
Motif
Other DBs
NCBI-GeneID:
125847490
NCBI-ProteinID:
XP_049383057
LinkDB
All DBs
Position
1:complement(20023743..20027830)
Genome browser
AA seq
710 aa
AA seq
DB search
MSKDPLIPRSKSVPCRISETQNVRSTNSDDSLKPSWHKKVDEERKRGSSSSKNSRSNNLD
EFNKRNAIQEEKRYSARSPYYKGLTDSSKEINRQKSLAGSTPGKDSSLLGSSTSNSSKSN
LAIKVQEWSASYFVRKGKEERASSFLNVSSGNKNIRDPSSSETKVIRTTIGEELGIHSKG
VRRRSKSRISQLDQGKPLRERASEMQTNNIVLLPAAPAPAPAPPVTSPIKLSLPSPPPTP
LILQTSQDEEIGSVLLPLPASSTQNVDDEKDTTNVKDMTVPEKQIDKRFTWADKYRPNAL
KDFLCNRNIALELKALAETDSSIRHFIFAGLPGVGKRTMIFALLRKIYGHDKVQARDKCK
VFHLKVSIPYHLSFYCISFDKLGIQNSETKVQRPQNMKIVKVPYSQNAFQGESVPSIKVN
VKESNKHVEINLSETKGYEKHVLVQLIKERKHKSSSRSAPPNPDNCKAIILGEADKLSTD
ALLYIKWMIERYEGCYKVFFCCSDSTKLQPIKSICKVFHLQKPSDDEIVDVLKFIAQQEG
IQLPHQMAARIASNSKSNLRQAIRSFEATWHFNTSLTENQEIKTGWEDDIAKIAKNIIEE
QSPKQLYDIRGKLQNLIEHNVSAEFIFNTVFEELKSNLDDQFHKDMDILKMKYNINSSDH
DQGKSDNDAVKKIVHKFMKIEEFTAKFMSWYKIFVLKKGNQNPILSKGDI
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagatccattgatcccgcgttcaaaatctgttccctgcaggatatcagaaact
caaaatgtcagatcaacaaattcagatgactcattgaaaccatcatggcataaaaaagtc
gatgaggaaagaaagagagggtcatcgtcttcaaaaaactcgaggagtaataacctcgat
gaattcaacaaaagaaatgcaattcaagaagaaaagagatactctgcaagaagtccatat
tacaaaggacttactgattcatccaaagagattaatcgacagaagtccttagcaggtagt
actcctgggaaagatagcagcttattaggttcttcaacaagtaacagttctaaatcaaat
ttagctatcaaggtacaagagtggagtgcatcttactttgttcgcaaaggcaaagaagaa
cgagcatcctccttcttgaatgtttcttcggggaacaagaacatccgtgatccttcttca
tctgagacaaaagtaatcagaacgacaatcggagaagaacttggtatacattctaaagga
gttagaagaagaagcaaaagtagaatttcacaattagatcaggggaagcctttgagggag
agagcatcagaaatgcaaacaaataatatagtactactacctgcagcccctgcccctgca
cctgcaccgccagtaacatcaccgataaaattgtcattaccatctccaccaccaactcca
ttaatattacaaacatcgcaagatgaagaaattggatcagtactactaccattaccagct
tcatcaactcaaaatgtcgacgatgaaaaagataccacaaatgtgaaagatatgacagtt
cctgaaaaacagattgacaaaagatttacatgggctgacaagtataggcctaatgctctt
aaagattttctatgcaatcgaaatattgcactggaattgaaggctctggcagaaacagat
agtagtattcgccatttcatatttgcaggactgccaggagtagggaaaagaaccatgata
tttgctctgcttcgtaaaatttatggacatgataaagtacaggcaagagataagtgcaag
gtgttccacttaaaggtatcaatcccctaccatctttctttctattgtatttctttcgat
aagttaggcatacaaaactcggaaactaaggttcagaggccacaaaatatgaagatagtg
aaagtaccttattctcaaaatgcatttcagggagaatcagttcccagcatcaaagtaaat
gtgaaggaatcgaacaaacatgttgagatcaatctctctgaaactaaaggctatgagaaa
catgtcctagtacaactaatcaaggagagaaagcacaaatcatccagcagatctgcacct
ccaaatcctgataactgtaaagctatcattcttggtgaggcagacaagctatcgacagac
gcattgttatatatcaaatggatgatagagagatatgaaggctgttataaggtcttcttt
tgctgcagcgatagcacaaagctccagccaattaagtctatttgcaaagtttttcatctt
caaaaaccttcagatgatgagattgtagacgtcttgaaattcatagcacaacaggaagga
atacaactaccacaccaaatggcagcgaggattgctagtaactctaaaagtaacctacgc
caagcaattcgctcttttgaagctacctggcacttcaacacttccttgactgagaatcaa
gaaatcaagacagggtgggaagacgacattgcaaagatcgctaaaaacataattgaagag
caaagtccaaagcagctatacgatatccgtgggaaattgcagaatttgatagagcacaat
gtatctgctgagttcatctttaatactgtgtttgaagaactcaagagtaatttggatgac
cagttccacaaagacatggacattctgaaaatgaagtataatataaattcaagtgatcac
gatcagggtaaaagtgataacgatgcagtaaaaaagattgttcacaaatttatgaaaatt
gaagagttcacagctaaattcatgagctggtataagatttttgttctgaagaaaggaaat
cagaaccccatcctcagcaaaggggatatatag
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