Solanum stenotomum: 125847551
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Entry
125847551 CDS
T08385
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125847551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125847551
03009 Ribosome biogenesis [BR:
sstn03009
]
125847551
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125847551
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125847551
Complex B
125847551
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125847551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
125847551
NCBI-ProteinID:
XP_049383121
LinkDB
All DBs
Position
12:49237005..49246122
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AA seq
708 aa
AA seq
DB search
MAATATASSTGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNTTQYERPVVTSHVGAA
QHKSSVSVSSSVEKPSQSECPDRGDNRGTNGALSKLSSGEGIQTAKVSELSRDETSAPKG
YSAPAAASDISPDAYRRQHEISVTGGDVPPPFTSFEATGFPSEILREIHQAGFPAPSPIQ
AQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFFLLKQRRSNPQSGPTILVLSPTRELATQ
IQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRVRLDQV
SYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRKIAADLLVNPVQVNI
GNVDELVANKSITQYIEVLSYMDKQKRLDQILRSQEPGSKIIIFCSTKKMCDQLARNLTR
PFGAAAIHGDKSQGERDHVLSQFRTGKSPVLVATDVAARGLDVKDIRVVVNYDFPTGIED
YVHRIGRTGRAGATGEAYTFFCDQDAKHASDLIKVLDGANQQVPTELRDMASRGGGMGRA
RRQWDSGSGGREGGRGGRYDAGYGGRDGARGGWEAPTSDRSGRAYDSDSRDSDGYGHGSR
DNDAPASYPARSFHETMMQASQRRDRSRSRSPNRGGSGWGDRKSRERSRSRSAEKFDRAR
FQVPEGGSFHEAMMSFSRSSAGDSREKVGGPCDDFLKDWKKERSPPRS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcatcttctactggtccacgttatgcaccagaggaccccacc
cttcccaaaccttggaaaggcctagttgatggtaagactggatatctctatttttggaat
ccagagaccaatactacccaatacgagaggcctgttgttacttctcatgtgggtgctgca
caacataaatcgtctgtatctgtaagttcatcagttgagaagccttctcaaagtgaatgt
cctgaccgtggtgacaacagaggtaccaatggtgcattgagcaaactttcctctggagag
ggcattcagactgcaaaagtaagtgagctttcccgcgatgaaacatctgctccaaaaggt
tatagtgctccagctgctgcaagtgacatatctccagatgcctatcgccgtcagcatgaa
atttctgtcacaggaggtgatgtgcccccacccttcacatcgtttgaagctactgggttt
ccttcggagattttgagggagatacatcaagctgggtttcctgctccttccccaatacag
gcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactggg
tctggaaaaactttgggtttcttgcttcctggcttttttcttctaaagcaacgtcggagt
aatcctcaatcaggccctactattttggttctgtcgccaacaagagaattagccacacag
atacaagacgaagctgtgaagtttggtagatcttcaaagatttcttgcacgtgtttatat
ggaggagccccaaaaggccctcagctacgagatctggacaggggagttgatattgttgtt
gctacccctggtcgtttgaatgatattttggagatgagaagagttaggctggatcaagtt
tcttatttggtgttagatgaagcggatcgtatgctggacatgggatttgaacctcagata
aggaagattgtgaaggaggtgcctacgcgacggcagacactgatgtacacagcaacatgg
ccaaaggaggtccgcaaaattgcagctgatctattggttaatccagttcaggttaacatt
gggaatgttgatgagcttgttgcgaacaagtctattacacagtacattgaagtcttgtca
tatatggataaacaaaagcggctagaccagatcttgagatcccaagagcctggatcaaaa
atcattatcttctgttcaacaaagaaaatgtgtgaccaacttgctcgcaatcttacacgc
ccatttggagctgctgcaattcatggtgataaatctcagggtgagagggatcatgtactg
agccagttccgcactggcaagtcccccgttcttgttgccactgatgttgctgctcggggc
ttggatgtcaaagatatcagggtggtggtcaactatgattttcctactggaatagaggac
tatgttcacaggataggaagaactggtcgggctggtgcgactggtgaggcctacacattt
ttttgtgaccaggatgctaaacatgcttcagatcttattaaagttttagacggagctaat
cagcaagtgcctactgaacttcgtgatatggcttctcgaggtggtggtatgggaagggct
aggcgtcaatgggattctggctcaggtggacgtgaaggaggacgtgggggacgttatgat
gctggctatggtggacgagatggagcaaggggtggttgggaagcccctacatcggacaga
agtggacgtgcttatgactcggattcacgtgacagtgatggatatggtcatggctctcgt
gataatgatgctccagctagttaccctgctcgaagcttccatgaaactatgatgcaggct
tcacagagacgtgatcgaagtcggagcagaagcccgaatagaggtggttcgggatggggt
gacagaaaaagcagggagcgcagtcgcagccgtagtgctgaaaaatttgatcgggctcgt
tttcaagttccagaaggaggcagtttccatgaagccatgatgagcttcagtagatcatca
gctggtgattccagagaaaaagttggagggccatgtgatgatttcctaaaggactggaaa
aaagaaagatctccacctagatcctaa
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