Solanum stenotomum: 125847705
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Entry
125847705 CDS
T08385
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sstn01009
]
125847705
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125847705
03041 Spliceosome [BR:
sstn03041
]
125847705
Protein phosphatases and associated proteins [BR:
sstn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125847705
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125847705
Spliceosome [BR:
sstn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
125847705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
125847705
NCBI-ProteinID:
XP_049383330
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All DBs
Position
12:49357858..49364329
Genome browser
AA seq
864 aa
AA seq
DB search
MELKASSPKPVISTSDCDSDPEEKEISDDDDRNHKHRRKETRSQSAETGALEPVLSRPFR
KRNKPFENGHPYQEGDSHWGDTRFGKRRGMGSFARTPSDSYQRMRLNQSVSGHAGPGRGR
GRESGAWGPCESRFGSIDIASQLVPPLLYTGRGLQNVSSGQSSSWNAFGMVPGMPNGGLD
TLHTLGLQGTLRTALNPAMSMGIPRQMCRDFEERGFCLRGDMCPLEHGVNRIVVEDVQSL
SQFNLPVSLPIAHMLGPNTAQGSLPAIGPSGSSASGKSLHSKSINPPVIDGGLGMTDAFG
GGSVAGGADFYDPDQPLWSNDHPATSTALLDVNQSKIDDMGPLLNADSSVRNQAGIYDGC
KLEPIDRGSGTASESQSVWGRMSRSKNKFEPFSSSQGITRHGKQTNVDTIDQQVLESSSE
PQSSSGRNMRNPSQKALRSLFVRGIPQKDNKPEALLSHFKKFGEVIDIYIPVNGEQAFVQ
FSKREEAEAALKAPDAVMGNRFIKLFWANRDSIMDDGVHGSSNLPRGGTPSTVPPHLSVP
HKRRDNLQTVAPKPAENGVVPVATSDLPKPVAKNGPKTTPALQKKLGTLELLKEEMRKKQ
EMLEQKRNDFRLKLDKLEKQAVGVKDEAVPDQSVKKPKGGGKGSNSGEVESSNPAEPSNA
VSSPHAKATPFSSRTTENAEPSCSKSSSLVAVQEASNLKQSIRPLAPVGAPFILNRYKLD
NRPTTFKILPPLPSGLANVDVLKEHFSTFGDLLSVELEDLEPQDCNNGSEVLNTSARISF
RSRRSAERAYLNGKCWQDQTLHFMWLQSSNSAKDIGVGENVTPASKQSSDVNGQSIANSC
LAGSQEGSGAGNGELENQERRQKE
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggagcttaaagcttcatctccaaagccggtaatttcaacttctgattgcgacagtgat
cccgaggagaaagaaattagtgatgacgatgatcgtaatcataagcatcgtagaaaggaa
acacgttcacagtctgcagagacaggggctcttgaacctgttttgagtagaccattcagg
aaaaggaacaagccgtttgaaaatggacatccataccaggaaggagattctcactggggt
gatactaggtttggtaaaaggcgaggaatgggttcttttgccaggacaccttctgattca
tatcagaggatgaggctaaatcagtccgtttctggtcatgctggtcctggtaggggtcga
ggaagagaatctggtgcttggggtccctgtgaatctaggtttggctctattgatattgca
tctcaattggtgccacctcttctttatactggaagggggctgcaaaatgtttctagtgga
cagagttcgtcttggaatgcatttggaatggttccaggaatgcctaatggagggcttgat
acacttcatacccttggtttacagggaacccttcggacagccttgaatcctgccatgagt
atgggaattccaaggcaaatgtgtagagactttgaggagcgtggattttgccttagagga
gatatgtgcccactggagcatggagtaaatcgcatcgttgttgaagatgttcagagcctt
tctcagtttaatcttcccgtttcacttcccattgctcatatgctgggaccaaatactgca
caaggatctttacccgcaataggcccctctggctcatcagctagtggaaaatctttacat
agcaaaagtatcaaccctccggtgattgacggtggattaggtatgactgatgcttttggt
ggtggttctgtggctgggggagctgatttctatgatcctgatcagcctttatggtcaaat
gatcatcctgcaacttcaacagcactcttggacgtcaatcagtctaaaattgatgacatg
gggcctttgctgaatgctgactcctctgttcggaatcaggctgggatttatgatggctgt
aaactcgagcctatagatagaggttccggaacagcttcagaatctcaaagtgtgtgggga
agaatgagtcgttcaaaaaataagtttgaaccattcagtagcagtcagggtataacccgt
catggtaagcaaacaaatgtagataccatagaccagcaagtgctggaatcatcttcagag
ccccaaagtagttctggacgcaatatgcgaaacccatctcaaaaggcactgcgtagtcta
tttgtaagagggattcctcaaaaggacaacaaaccagaagctcttctttcacattttaaa
aaattcggtgaggttatcgacatctacatcccggtaaatggtgaacaagcttttgttcaa
ttttctaagagggaggaagctgaggctgctttaaaagcaccagatgctgtgatgggaaac
cgctttataaagctattctgggcaaacagggatagcattatggatgatggagtacatggt
agtagtaatttaccccgtggtgggacccctagtacagttccaccccatctatccgttcct
cataaaagaagagacaatctgcagactgtagcccccaaacctgctgaaaatggtgttgtt
ccagtagccacctctgatctgcccaagcctgtggctaagaatggtcccaaaactacacca
gctttgcaaaaaaagctgggaactttagagcttctgaaggaagaaatgcgcaagaagcag
gaaatgcttgagcagaagcggaatgacttccgactcaagttggataagcttgagaagcaa
gccgtgggtgtgaaagatgaggcagtgccagatcagtctgtgaagaaaccaaagggagga
ggaaaaggttccaactctggtgaagtggaaagttcaaaccctgcagaacctagtaatgct
gtgtcatcaccacatgccaaagcaacaccatttagtagcagaactacagagaatgccgag
cccagttgttccaagtcatcttcgcttgtcgcagtgcaggaagcttcaaacttgaagcag
tcgatccgtccattggcaccagttggcgcaccgtttatcttaaatagatacaaactagat
aaccgacccacaacattcaagatccttccacctctgccaagtggtctggcaaatgttgac
gtcctgaaggaacacttttctacatttggtgatcttctgtctgttgagctggaagattta
gaacctcaagattgtaataatggctcagaggtgctaaatacatctgctaggatatctttt
cgatcacgccggtctgctgaaagagcatatttgaatggtaaatgctggcaagaccaaact
ctgcattttatgtggttgcaatccagtaattccgcaaaggatattggtgttggagaaaat
gtcactccagcttcaaagcagtcttcagatgttaatgggcaatccattgcaaacagttgt
ctggctggttcccaggaaggaagcggggcagggaatggtgaacttgaaaatcaagaaaga
agacaaaaagaatga
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