Solanum stenotomum: 125847724
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Entry
125847724 CDS
T08385
Name
(RefSeq) pre-mRNA-processing factor 39-2
KO
K13217
pre-mRNA-processing factor 39
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125847724
Spliceosome [BR:
sstn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125847724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
125847724
NCBI-ProteinID:
XP_049383355
LinkDB
All DBs
Position
12:complement(27121559..27143441)
Genome browser
AA seq
1279 aa
AA seq
DB search
MEVHNNNAADGHHPIQVLLDSEDRTMVSFIEVHNERLKDMISGGSEDLDSWNSLISEIEK
TYPDDSNTICLAFDSFLSKFPLCHWHWKRYAYHEARLCNAEKAVEIFERAVESTPFSVGL
WVDYCTFAVSSFEDPFDIRRLFTKGISLVGKDYFCHVLWDKYMSFEFSQEKWGFLTLVYV
QALRFPTKKLHKYYENFKKLVTNLEEEILHLTDDSREVQLKELSDATVVLSNKEIAQVVK
DLQDPSDGSVRLKALYKYRYCGDQLYQKACQLEEKIKSFESNIQRRYFQATPLDNDELKN
WHDYLDFIEKQDDFDWALKLYERCLISCANYPEFWIRYVDFMETRGGRELAMFALERATK
VFSKNVPEIHLFTARYMEQIGDPDGARASFPPINADWDSCFIQYVTNRANMEKRLGNCSA
AFDIYKRAINMAAKEQKLQCIPMLYIGYYRLRHMITASVEAARDVIIDGINRFPGCGLLY
EELIRFAMVHEGTKQLSIVDSVIVNAISPVSDVSQDLDIKDRESISLLFLELVDLCGSIS
EIRKAWSRHIKLFPQFIRTNTSSKHIGTEKSSLNNFIEQRRNISYVLVNQPSKGTSSGHT
IQLSEGEQVHLLTLKDGKQPDQPSADRSLAVVNDKDVTGQQKQLPPEMEDLSSGNGSGKN
ELSFDPVVQSKDDSSTPMELSHGPSQQRRENLPGPMDFSYDSIPQPGEDVSKSPGPVLDL
KEPSRPLSVLEASQADTINRDQDVELKQPPMPVSLENLSLVSGERESQDFVAMHSNDLES
GEEIPSSSTGRPQDPVNDGNGPVGCSSPSTYLFSESAQTHPGPVTAESSLLNDTVAVPES
GNSKVPNQPAGYDQQQQPQRAASQEPCLRDSQGDSEIQQVLDKATVQCQTGTSQGNISSN
QCWTLNNMPQQISMSGNHPLASSSPVSYSQPSTALHSVHDSQQSGPDPHHEALNQKSQHI
SLSENHPQMSSSPASFSQPSTPQHFRQSSQQIGPLHNQEALNQTSQHHYQQQHLLQGQYQ
QHQLQMQQPYTSIQQQQMHLHPSQQHYQQQQLIQQQQQQQNQQQTPLLQQQQQQQQYFQQ
IQSLQYPQQQYLLHQLQYLPQAQQLWQQQFQLQAQQMQSQEGQQTQQHYLQTQEQQLEQY
RQSQELAYQMQQHGYQLLLHQYQVHQQQQQQRQQQGHLQLQQYSHLQQQQYHHLEQQTDE
EYNQTHQGQQVVEPHSSGTPAPETESPESARQPHSAEKSGYSVSPYRRAPAHGISPSHST
GTLASEVSSFSRTNSSRDQ
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacacaataacaatgctgctgacggacatcatcccattcaagtattgcttgat
tctgaagacagaactatggtttcctttattgaagttcataatgaaagacttaaggatatg
atttctggaggctcagaagaccttgattcctggaactcactgatatcagagattgagaaa
acctaccctgatgatagcaatacaatttgtttggcttttgactcctttttgtctaagttt
ccactatgtcactggcattggaaaagatatgcttatcacgaggcacggctatgtaatgct
gaaaaggctgttgaaatctttgagagagctgtggaatcaacaccattttctgttggactg
tgggttgactattgtacctttgctgtgagttcgttcgaggatccatttgatattcgtagg
ttgtttaccaaaggaatctcccttgttgggaaggactacttctgtcatgtcttatgggac
aagtacatgtcctttgagttctctcaagagaagtggggcttcctcactctagtttatgta
caggctctacgcttccccacaaagaagttgcataagtactacgagaactttaagaagctt
gtaaccaatttagaagaagagattctacatctcactgatgacagccgtgaagtacaacta
aaggagctgtctgatgcaacagttgtgttatcaaataaagaaattgctcaagttgttaag
gacctccaggatcccagtgacggttcagtcagattgaaagcactgtataagtacagatac
tgtggagatcagctataccagaaagcgtgtcaactagaggaaaaaattaaaagttttgaa
tcaaacatccagaggcgatatttccaggcaactcctcttgacaacgatgagctgaagaac
tggcatgattatctcgacttcattgaaaagcaagacgattttgattgggccctaaaactg
tatgagagatgcttgatatcctgtgccaactatcctgagttctggatacgttatgttgat
tttatggagactaggggaggacgagagctagcgatgtttgctttagaacgagcaacaaaa
gttttctcaaagaatgttccagaaatccatctttttactgctagatatatggagcaaatt
ggagatccagatggtgctcgcgcttcttttcctcctattaatgcagattgggactcctgt
ttcattcaatatgttaccaatcgagcaaatatggaaaaacgtctgggaaattgctcagct
gcttttgatatttacaaaagagcaattaatatggcagcgaaggagcagaaattgcaatgc
attcctatgctatacattggttattatcgtcttagacacatgatcactgccagtgtggag
gctgcaagagatgtaataattgatggaataaatcgtttccctggttgcggacttctttat
gaggagttgataagatttgcaatggtgcatgaaggaactaaacaattgagcattgtagac
tctgtcatagttaatgcaatctctcctgtgtcagacgtatcccaagatttggatataaaa
gatcgagagagtatatccttattatttttggagttagttgatctttgtggttctatctct
gagataagaaaggcatggagtcgtcacattaaattgtttcctcagttcataagaaccaat
acctcatctaaacacataggtactgagaagagttcactgaacaactttatcgagcaaagg
agaaacatttcttatgtcttagttaatcagccatcaaaaggaacaagctctggccatacg
atccagctgtccgaaggagagcaggtgcatttactgacgcttaaagatgggaagcaacca
gatcagccttctgcagaccggtctttagctgtggtcaatgacaaagatgtgactggtcaa
caaaaacagctacctcccgaaatggaagatctgtccagtggaaatggctctgggaaaaat
gagttgtcttttgaccctgtggttcaatcaaaggatgattcatcgacgccaatggaatta
agtcatggtccatcacagcagaggagagaaaatttgcctggaccaatggacttctcttat
gattccataccccaacctggagaagatgtatccaaatctcctgggcctgttctggactta
aaagaaccatcgaggcccctctctgttttagaagcctcacaagcagatactatcaatcga
gatcaggatgttgaacttaaacagccaccgatgccggtttctttggagaatctttccttg
gtttctggggaaagggagtcccaggacttcgtcgccatgcattctaatgatcttgaaagt
ggtgaagaaattccctcatcaagcacaggtagaccacaagatcctgtaaatgatggaaat
ggaccggttggttgttcatctccatcaacatatctgttttccgaatcagcacaaacacat
ccaggtcctgttactgctgaaagttcactgctaaatgatacagttgcagttcctgagagt
ggtaattcaaaggtgcccaatcaacctgcaggatatgatcagcaacagcagccacaacga
gctgcttcacaagaaccatgcctacgtgattctcagggtgattcagagatccaacaggtc
ctagataaggctactgtgcagtgccaaacaggtacttctcaggggaatatctcgagcaat
caatgctggacattgaataatatgccacagcagatttccatgtctggaaaccatcccctg
gcgtcttcctcacctgtttcttattctcaaccaagtacagctctacattctgtgcacgat
agccagcaaagtggaccagatcctcatcacgaagcattgaatcaaaaatcgcaacacatc
tccctatcagaaaaccaccctcaaatgtcttcctcacctgcttctttttctcaaccaagt
acacctcaacattttaggcagagtagccagcaaattgggcccttacacaaccaagaagca
ctgaatcaaacatcacaacaccattaccagcagcagcatcttttgcaggggcagtatcag
cagcatcagctgcaaatgcaacagccctacactagtatacaacagcaacagatgcatcta
catccaagtcaacagcattatcagcagcagcagcttattcagcaacaacaacagcaacag
aatcagcagcaaacacctctactgcaacagcaacagcaacagcaacagtatttccagcaa
attcagtctttacaatatccacagcagcaatatcttctgcaccagctacaatatttacca
caggcacagcaactctggcaacagcagtttcaactgcaagcacaacaaatgcaatcacag
gaaggccagcaaacgcagcagcactatctgcaaacacaggagcagcagctagagcaatat
cgtcaatcacaagaacttgcataccagatgcaacaacatggttatcaactactcttgcac
cagtaccaagtacatcaacaacaacaacaacaacggcaacaacagggacatctccaatta
cagcagtactctcacctacaacagcagcaatatcatcatctggagcagcaaacggatgag
gaatacaatcaaacccatcagggtcaacaggttgtggagccacattcttcaggaactcct
gctcctgaaacagaatcaccagaatctgcaaggcaaccacattcagcagaaaaatctgga
tattctgtatccccttataggcgagcccctgctcatggaatctcaccttcacatagtacg
ggcacattggcatcagaggtttcttcattttcgaggacaaattcttcccgagatcagtaa
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integrated database retrieval system
