Solanum stenotomum: 125847776
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Entry
125847776 CDS
T08385
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
sstn
Solanum stenotomum
Pathway
sstn03420
Nucleotide excision repair
sstn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125847776
09124 Replication and repair
03420 Nucleotide excision repair
125847776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
sstn03051
]
125847776
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125847776
Proteasome [BR:
sstn03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
125847776
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
125847776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
UBA_RAD5A
Rad60-SLD_2
Dsc3_N
UBA_3
TECR_N
CUE
Ubiquitin_4
Crinkler
Permuted_GreAB-C
SWI-SNF_Ssr4_C
Motif
Other DBs
NCBI-GeneID:
125847776
NCBI-ProteinID:
XP_049383417
LinkDB
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Position
12:complement(17907800..17914256)
Genome browser
AA seq
386 aa
AA seq
DB search
MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQGKVLKDPTTLE
ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSNSAQPATSTGQPTQTVAPQATAASVAPA
QSAPTPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWER
DTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPASGQAVNPPVQASQPAVPSGGPNA
NPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQILQPMLQELGKQNPQLM
RLIQEHQADFLRLINEPVEGEGNVPGQPAGAIPQAVTVTPEEREAIERLEAMGFDRALVL
QVFFACNKNEEMAANYLLDHMHEFDE
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttttgtgaagactttgaaaggcactcacttcgagatcgaagtgaaacccgaa
gacacagttgctgatgtgaagaaaagcatagaaacagttcaaggtcaagatgtctacccc
gctgcacaacagatgcttatccaccagggtaaagttctcaaggaccctacaacattggag
gaaaacaaagttgctgaaaatagttttgtcgttataatgctttccaagaataaggtttca
acaagtggaacctcagctacacagccagcgccttcaaattcggcccaacctgcaacatcc
actggccaacctacacagacagtagcacctcaagcaactgctgcaagtgtggcacctgca
caatctgctcctactccggctcctgctcctgctccagctccagcaccagcaccagctcca
gctgccgctaatcccttgacagacgtgtatggccaagcggcatcaaaccttgttgctgga
agtaccttagaaactacggttcaacagattcttgatatgggtggtggaagttgggaacgg
gatacggttgtgcgtgctctacgggctgcatataacaatccagagagagctattgaatac
ctgtactctggtattcctgagcaagcagaaatcccacctgctgctcctgccagtggacag
gctgtaaatcctccagttcaggcttcacagccagcagttccgtccggtgggccaaatgct
aatcctttggatctctttcctcagggccttccaaatgtgggttcaaatgttggagctgga
aatttggatttcttaagcaatagtccacagtttcaagccctccgtgcaatggtgcaagca
aacccacaaatattgcagccaatgctccaggagttgggtaagcaaaatcctcaattgatg
cggctgattcaagagcatcaagctgacttcttgcgcctcatcaatgaacctgttgagggg
gaagggaacgtgcctgggcagccggcaggggctataccacaagctgtgactgtcacacct
gaagagcgtgaggctattgagcgacttgaagctatgggtttcgatcgagctttggtgttg
caagtattttttgcatgcaacaaaaatgaggagatggctgcaaactatctgttagatcac
atgcatgagtttgatgaatga
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