Solanum stenotomum: 125848060
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Entry
125848060 CDS
T08385
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03020
RNA polymerase
sstn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125848060
09124 Replication and repair
03420 Nucleotide excision repair
125848060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125848060
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125848060
Enzymes [BR:
sstn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125848060
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125848060
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125848060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
PRISE
Motif
Other DBs
NCBI-GeneID:
125848060
NCBI-ProteinID:
XP_049383811
LinkDB
All DBs
Position
12:36469651..36476879
Genome browser
AA seq
1191 aa
AA seq
DB search
MDMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLV
AKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKAA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggatatggaggatgaatatgaaccccaatacaatgttgacgatgatgaagaggagata
acccaagaagatgcttgggctgtgattagtgcttactttgaagagaagggtcttgttcgt
caacaactagattcgtttgatgagtttattcagaacacgatgcaagaaattgttgatgaa
tctgctgatatagagatccgacctgagtcccagcataaccctggtcaccaatctgacttt
gctgagactatctataaaatcaattttggtcagatttatttgagtaagccaatgatgaca
gagtcagatggtgaaactgctaccctatttccaaaggctgcaaggttgaggaatctgaca
tattctgctcctttgtatgtggatgtcacgaaacgagtcatcaagaaaggacatgatggt
gaagaagttactgaaactcaggacttcacaaaagtctttattggaaaggttcctataatg
ctgcggtcaagttactgcacattatatcaaaattctgagaaagatctaacagagcttgga
gaatgtccattagatcaaggcgggtatttcattataaatggaagtgaaaaggtcttaatt
gctcaggagaagatgagcacgaaccatgtgtatgtctttaagaagaggcaacctaacaaa
tatgccttcgttgcggaagtcaggtcaatggcagaatctcaaaaccgcccgccaagtact
atgttcgtgaggatgctctcaaggactagcgcaaaagggggttcctcgggccaatacatt
cgagcgacacttccatatatccgtacagagattcctattatcatcgtgtttcgagctcta
ggttttgttgctgataaggatatattggaacatatctgttatgatttcaatgatactcaa
atgatggagttgttacgtccgtcgttggaagaagcttttgttattcaaaaccaacaggtt
gctcttgactacatcgggaaaagaggggctacagttggtgttacaagggaaaaaaggatt
aagtatgccaaagagattcttcagaaagaaatgcttcctcatgttggggttggagagtat
tgtgaaaccaagaaagcttattattttgggtatatcatccaccggcttttgttatgtgcg
cttggccgaagggctgaggatgatagggatcattatggaaataagagactggatcttgct
ggtcctttgcttggtgggctgtttcggatgctctttagaaagttgacaagggatgttaga
ggctatgtgcaaaagtgtgttgacaatggaaaagatgtaaatctccaatttgcaatcaaa
gctaagaccattaccagtgggctgaaatactctcttgctactggaaactgggggcaagct
aatgcagcgggtacaagggctggtgtttcgcaggtgctgaatcgtctgacttatgcctct
actttgtctcacttgcgacggttgaattcccctattggacgagaagggaaactggccaaa
ccaaggcaattgcataattcacagtggggaatgatgtgtcctgcagaaacaccagagggc
caagcatgtgggctggtgaagaatctagctttaatggtttatataacagttggttcagcg
gcatatccaattttggagtttttggaagagtggggtactgagaactttgaggaaatttct
cctgcagttattccacaggctacaaagatctttgtcaatggtacctgggtgggaattcat
cgtgatcctgacatgttggtgagaacattgagacgacttaggagacgggttgacgtcaat
actgaggttggggtggtccgtgatatccgtttgaaagaacttcgaatttataccgactat
ggcaggtgcagtcgtccattgtttattgtggaaaagcaaaggctgatgatcaagaagaag
gatattcaaacattgcaacaacgggaatcacctgacgagggtggctggcacgatttggtg
gctaagggatacatcgagtatattgacactgaagaggaagagacaacgatgattagcatg
actataaatgatcttgtgcaagcacgccttaatcctggcgacgcttattctgatacctat
actcattgcgaaattcatccatcactaatattgggtgtctgtgcatcaattattccgttt
cctgatcataatcagtctccccgtaatacttatcagtcagctatgggtaagcaagccatg
gggatttatgtcaccaactaccaatttcggatggacacattggcctatgtgctttattat
cctcagaagcctcttgtcacaacacgagccatggaacacttgcattttaggcaactacct
gcgggcatcaacgcaattgtcgctatctcctgctattctggatacaatcaagaggattct
gtcattatgaatcagtcatcgattgatcgtgggtttttccgatctctatttttccgttcg
tacagggacgaggagaaaaagatggggacattggtcaaggaggactttggacgtcctgat
agagctactactatgggtatgcgccatggttcgtacgataagttggatgacgatggtctt
gcccctccaggaactagagtttctggtgaggatgttatcattgggaagacaactcccatt
tctcaggatgatgcgcaagggcaagcctctcgctatacgaggaaagatcacagtaccagt
cttcgccatagtgaaactggaatggtggatcaggttctattaactacaaatgctgatggg
ctcagatttgttaaagtgagggtcagatcagtccgtattcctcaaattggggacaagttt
agcagtagacatggtcagaagggaacagtcggcatgacatatacacaagaagatatgcca
tggaccgtggaaggcattagtcctgatattattgtgaatcctcatgctattccttctcga
atgactattggtcagctgattgaatgtattatggggaaggttgctgcacacatgggaaaa
gaaggcgatgccactccctttacagatgttactgtcgataacatcagcaaagctctgcat
aaatgtggttaccagatgcgtggttttgagaccatgtacaatggtcatactgggcggcgg
cttagtgcaatgatattccttggtcccacgtactaccagcgcctgaagcatatggttgat
gacaagattcattctagaggcagaggccctgtgcaaatcctcacaaggcagcctgcggaa
ggtcggtcacgtgatggtggtcttcgttttggagagatggagcgagattgtatgattgct
cacggtgctgctcattttctcaaggagcggttatttgaccaaagcgatgcatacagagtt
cacgtttgtgagcgctgtgggctgatagccattgccaacctcaagaagaattctttcgaa
tgcagaggttgcaagaacaaaactgatatcgtccaggttcacattccctatgcatgcaaa
ttgcttttccaggagctaatggctatggctatagctccaagaatgcttacaaaggatgtc
aagctagccaaagatcaaaagaagaaagcagcttga
DBGET
integrated database retrieval system
