Solanum stenotomum: 125848078
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Entry
125848078 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18-like
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sstn03009
]
125848078
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125848078
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125848078
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Motif
Other DBs
NCBI-GeneID:
125848078
NCBI-ProteinID:
XP_049383833
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All DBs
Position
12:complement(36999383..37005739)
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AA seq
594 aa
AA seq
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MASANQNKALTNTRFSDLEPRLAEPVLEALTNSGFEFCTPVQAATIPLLCSYKDVTVDAA
TGSGKTLAFVLPVVEIIRRSSSNPKPHKVMGIIISPTRELSSQIFHVAQPFISTLANVRP
MLLVGGLEVKADIKKIEEEGANLLIGTPGRLYDIMERMDILDFRDLEILILDEADRLLGM
GFEKQLNSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKQLSGSASGN
STSSKTPSGLHIEYLECEADKKSSQLVHLITKNKSKKIIVYFMTCASVDYWGTVLPRLSC
LKSFSLISLHGRMKQSAREKALASFTALSSGVLLCTDVAARGLDIAGVDYIIQYDLPQDD
KMFIHRVGRTARLGRQGSAVVFLLPKEEAYVEFLRIKDVFLEEGECASDAPDIIDEIRSA
AKKDRDVMEKGLRAFVSYIRAYKEHRCSYILRWKELEIGKLGMGYGLLQLPSVPDVKHHS
LSTKGFTAVEDINLDEIKFKDKSREKQRKKNLQVKKAAMAQQQEQKTQRLKKEANSTATA
SRKRTAKQRRATQLVEDEDEITREYRLLKKLKKGAIDENEFAKLTGTEDLLSDI
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcgaatcagaacaaagctttaacgaatactcgtttctccgacctcgaaccg
cggctggctgagccagttttggaagccctaaccaactccggcttcgagttctgtactcct
gttcaggctgccaccatacccttactctgcagctacaaggatgtcaccgtcgacgccgcc
actggctctggtaaaaccctagcctttgttttacctgtggttgagatcatccgtcgctcc
tcttccaatcccaaacctcacaaggtaatgggtataattatatcacccaccagggagttg
tcgtcacaaatatttcatgttgctcagccattcatttccacattagcaaatgttaggcct
atgcttcttgttggaggattagaagtaaaggcagatatcaaaaagatagaggaggaagga
gcaaatttgttgattgggacacctgggaggctatatgacataatggagcgcatggatata
ctggactttcgggatcttgagatcctgatattagatgaggctgataggctattaggcatg
ggatttgagaagcagctaaattcaatcatttctcgtttacctaagcttcgtagaacgggt
ctcttctctgctactcaaactgaagcagttgaagaactatcaaaggcaggattgagaaat
cctgtcagggttgaagttcgggcagaagcaaaacagttgagcggttctgcgtctgggaat
tcgacctcgtcaaaaacaccttctggccttcatattgagtatctggaatgtgaagcggac
aagaaatcatcgcagcttgtacacctcataacaaagaacaagtcaaaaaaaattatagtt
tatttcatgacttgtgctagtgttgattattggggaactgttcttccacgtctctcttgt
ctgaaaagtttttcattaatctctcttcatggaaggatgaagcagagtgcaagggagaaa
gcactagcatcatttacagctctttccagtggtgttcttttatgcacagatgtagcagca
cgtggacttgatattgcaggtgttgattatataatacagtatgaccttcctcaggatgat
aaaatgtttatacatagagtaggccgaacagctaggctgggccgacaaggtagtgctgtt
gtttttctattaccaaaggaggaagcatatgtggagttcttgcgtataaaagacgttttc
ttagaagagggggaatgtgcctctgatgctcctgatattatagatgaaatacggtcagca
gcaaagaaagatcgtgatgtaatggagaaaggactcagagcctttgtatcatacatccgt
gcatataaagagcaccgctgctcttacattttaaggtggaaggagcttgagattgggaag
ctgggcatgggatatggtcttttgcaacttccttctgtgcctgatgtgaagcatcattct
ctttctacaaagggattcactgctgttgaagatatcaacctggacgagatcaagtttaag
gacaaatccagggagaagcaaagaaagaagaatttacaagtgaaaaaagctgcaatggca
caacaacaagaacagaagacacagagacttaaaaaagaagcaaattctacagcaactgcc
tcgagaaagagaactgccaaacaaagacgtgctacgcagttagttgaagatgaagatgag
atcacaagggagtaccgcttattgaaaaagcttaaaaagggagctatcgatgagaatgag
tttgcaaaattgactgggacagaagacttgctttctgacatatga
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