Solanum stenotomum: 125848089
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Entry
125848089 CDS
T08385
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125848089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125848089
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125848089
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125848089
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125848089
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
125848089
NCBI-ProteinID:
XP_049383848
LinkDB
All DBs
Position
12:28059176..28073385
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AA seq
677 aa
AA seq
DB search
MDDGEGGLNFDFEGGLDTGPTHPTASVPVIQSAGHITTGPAPNASVALVPPGGSVGQGGD
GSFGGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVVEVLQRIQNLTSYGYSNRFFQNR
NTNYSTQADKSQIPQVPNVMNQAVKSTAAEPPIGQPHQPHQQQVQQPQHQGAPTQTQTLP
SSQQNQAAIPLPQGPSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVIL
IFSVNRTRHFQGLAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKTRHL
RNPYNENLPVKISRDCQELEISVGEQLASLLYVEPDSELMAVSLAAESKREEERAKGVNP
DNGNENPDIVPFEDNEEEEEEESEEEEEDEGFGQAFGPAALGRGRGRGIVWPPLVPFGRG
ARPFPGMRGFPPGMMSDGFSYGSMTPDGFPMPDPYGMGGRPFGPFGPRFPGDMMFHSRPP
AAGGFGMMMGPGRPPFMGGMGPGAPGPPRGGRPMGMHPSFIPPTPPPSQNPRVKKDQRAP
FNERNDRFSSGPDQGRGQEIAGSVGGPDEGVHFPQTENSFRNDESESEDEAPRRSRHGDG
KKKKNSMDGDATTGTEK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagaaggaggattaaactttgattttgaaggtggcttagatacagggcca
acacatccaactgcatctgtaccagtaattcaatctgcaggccacatcaccaccggtccc
gccccaaatgcttctgttgccttagttcctccaggcggcagtgtggggcaaggaggggat
ggttcatttggtggtaatcgtagaagtttcaggcagactgtttgcaggcattggctacgg
tcgttgtgtatgaaaggtgatgcttgtggtttccttcaccagtatgataagtcccggatg
cctgtttgcaggttctttagactctatggagagtgtcgtgaacaagattgtgtttataag
cacaccaatgaggatattaaagaatgtaacatgtataaattaggattttgtccgaatggt
cctgattgccgatatagacatgcaaagctgcctggacctccacctccagtggtagaagtt
cttcagagaattcagaatttgacatcctatggttactcaaacaggttttttcaaaatcgg
aatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatg
aatcaagcagtgaaatctacagcagcagagccacccattggccaaccgcaccagccgcat
caacaacaagttcaacagcctcaacatcagggtgccccaactcaaacacaaacccttccc
agcagccagcaaaatcaggctgcaatacccctgcctcaaggaccatctaggtactttata
gttaaaagctgcaaccgtgagaatcttgaattgtcagtacaacaaggagtttgggcaact
caacgaagcaatgaggctaaactaaatgaagctttcgactctgtggaaaatgtcattcta
attttttcagtcaatcggactaggcattttcagggtcttgcaaaaatgacatctagaatt
ggtggtgctgctaaaggaggaaattggaagcatgaacatggaactgcacattatggacgg
aatttttcagtgaaatggttaaagctctgtgaactgtccttccagaaaactcgtcatttg
aggaatccatacaatgagaacttacctgtgaagataagcagagattgtcaagaattagag
atctctgttggtgagcagttggcttctttgctctatgtggaaccagacagtgaacttatg
gcagtctcactagctgcagaatccaagcgagaggaggaaagagcaaagggagtaaaccct
gataatgggaatgagaacccagatatcgtaccttttgaagacaatgaagaagaggaagaa
gaagaaagtgaagaggaggaggaggatgagggctttggccaagcttttggaccagctgct
ttgggcagaggaaggggtaggggaatcgtatggcctcctctagttccttttggacgtggt
gccaggcctttcccagggatgcggggcttccctcctggcatgatgagtgatggattttct
tatggatcaatgacacctgatggttttcctatgcctgatccttatggaatgggtggccga
ccttttggaccatttggccctcgattccctggtgatatgatgtttcacagccgtcctcca
gctgctggtggatttggaatgatgatgggtccaggaaggccccctttcatgggtggaatg
ggtcctggagcacctggcccacccagaggtggtcgaccaatgggaatgcatccatcattt
attccacccacaccaccgccctctcaaaatcctcgggtcaaaaaggatcagagagctcct
tttaatgaaaggaacgatagattcagttcaggtccagaccaaggtaggggtcaagagatt
gcaggctcagttggtggaccagatgaaggagtacattttccacaaactgaaaacagcttt
agaaatgatgaaagcgagagtgaggatgaagcacctagaaggtccagacatggtgatgga
aagaaaaagaagaatagcatggatggagatgctacaactggcacagaaaagtaa
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integrated database retrieval system
