Solanum stenotomum: 125848140
Help
Entry
125848140 CDS
T08385
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sstn
Solanum stenotomum
Pathway
sstn00040
Pentose and glucuronate interconversions
sstn01100
Metabolic pathways
Module
sstn_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125848140
Enzymes [BR:
sstn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
125848140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
125848140
NCBI-ProteinID:
XP_049383906
LinkDB
All DBs
Position
12:complement(31156358..31157911)
Genome browser
AA seq
392 aa
AA seq
DB search
MSPLAIFFLFLIHSSLAANTNIYNVQNYGAKSDGKTDSSKAFLSAWAAACASNTPATINV
PSGKYLIHNANFNGQTCKSKAITIHIDGTLLAPSDYNVIGNDENWIKFEKVNGVSIYGGT
FDGQGAALWACKNSNSKNCPDGTTALTFYNSNNIIMSGVTVQNSQKFQILVDGCHNVKLR
GMKVLAQGNSPNTDGIHVKLSSGVSIMKSQIGTGDDCISIGPGTSNLWIEGIACGPGHGI
SIGSLGWKQQELGVQNVTVKTVTFSGTTNGVRVKTWARPSSGFVRNILFQHIVMVNVKNP
ILIDQNYCPNHESCPHQGSGIKISDVTYQDIRGTSATKIAVKLDCSITNPCSSISLEDLN
LSYQNQQTEASCVNARGRVSGLQKPNNCLLKN
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccttagcaattttcttcctcttcttaatccactcatcgttagcagcaaatacc
aatatttacaatgtccaaaattatggagcaaaatccgatggaaaaactgattcatcaaaa
gcctttttgagtgcatgggcagcagcatgtgcttctaatacccccgccactattaatgtg
ccaagtggaaaatacttgattcacaatgcaaacttcaatggacaaacatgcaagagcaag
gctattactatacacattgatgggactctcttagctccctctgattataatgtgattggc
aatgatgaaaattggataaaatttgaaaaagtcaatggcgtttccatctatggtggaacc
tttgatggtcaaggtgctgctctttgggcttgcaagaactccaacagcaagaattgccct
gatgggactacggcattgactttttataactcaaacaacattataatgagtggagtaacc
gttcaaaatagtcaaaagtttcaaatattagtagacggatgtcataatgtgaagctacga
ggaatgaaggtattagctcaaggaaatagtcccaacactgatggaattcatgtaaaatta
tcatcaggagttagtattatgaaatcacaaattggtactggagatgattgtatctctatt
gggcctggaacttctaacttatggattgaaggcattgcatgtggccctggccatggaata
agcattggaagcttaggctggaaacaacaagagttaggagtccaaaatgtgacagtaaaa
accgtgactttcagtggaacaacaaatggtgtgagagtgaaaacttgggcacggcctagc
agtggctttgttagaaacattctctttcaacatattgttatggttaatgttaaaaaccca
atcctcatagatcaaaattactgtcctaatcatgaaagttgtcctcatcagggctcgggt
ataaagataagtgatgtaacatatcaagacatacgtggaacatcggctacaaagattgca
gtgaaacttgattgtagcataactaatccatgtagcagcatttcacttgaagatctgaat
cttagttatcaaaatcagcagactgaagcttcatgtgttaatgccagaggaagagtttct
ggtttacaaaaacctaacaattgcctattgaaaaattag
DBGET
integrated database retrieval system
