Solanum stenotomum: 125848380
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Entry
125848380 CDS
T08385
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125848380
09123 Folding, sorting and degradation
03018 RNA degradation
125848380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125848380
03041 Spliceosome [BR:
sstn03041
]
125848380
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125848380
mRNA degradation factors
5'-3' decay
Lsm complex
125848380
Spliceosome [BR:
sstn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125848380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
125848380
NCBI-ProteinID:
XP_049384196
LinkDB
All DBs
Position
1:complement(10743620..10747971)
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGGRGRGRGGRDEGAAGRQAKGIGRGM
EDAGAKGRGKGGPGAKSGGKGGGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctctttgctcaagactgcacaggggcatcccatgttggtggagctaaaa
aatggagagacttataatggtcatttggtgaattgtgatacttggatgaatatccatctt
cgtgaagttatctgtacgtcaaaggatggagatagattttggagaatgcctgaatgttat
attcgtggcaataccattaagtatcttagagttcctgacgaggtgattgataaagttcaa
gaagaaacaaaaagccgtggagatagaaaaccacctggtgtcggtggacgaggaagggga
agaggaggtagggatgaaggtgctgctggaagacaggcgaaaggcattgggcgtggaatg
gaagatgcaggtgccaaaggccggggcaaaggaggacctggtgccaagtctggtggaaaa
ggtggtggccgtggacgtggctaa
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