Solanum stenotomum: 125848650
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Entry
125848650 CDS
T08385
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
sstn
Solanum stenotomum
Pathway
sstn03420
Nucleotide excision repair
sstn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125848650
09124 Replication and repair
03420 Nucleotide excision repair
125848650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
sstn03051
]
125848650
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125848650
Proteasome [BR:
sstn03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
125848650
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
125848650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
Rad60-SLD_2
UBA_RAD5A
Dsc3_N
TECR_N
UBA_3
Permuted_GreAB-C
Motif
Other DBs
NCBI-GeneID:
125848650
NCBI-ProteinID:
XP_049384518
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Position
12:complement(43074060..43079628)
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AA seq
391 aa
AA seq
DB search
MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDATTLE
ENKVAENSFVVIMLSKNKVSSTGTSSIPAAPSNTAQPAGSTDQARQTITAPQATAALPQS
ASESPPAPAPAPAPVPAAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDRDTV
VRALRAAYNNPERAVDYLYSGIPEQAEIPPVSPTPAAPAPASGQAINPAAQDASQLAVPS
SGPNANPLDLFPQGLTNAGSNASAGNLDFLRSSPQFQALRAMVQANPQILQPMLQELGKQ
NPHLMRLIQEHQPDFLRLINEPVEGEGNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFD
RALVLEVYFACNKNEELAANYLLDHMHEFDE
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttcgtgaagactttgaaaggcactcacttcgagatcgaagtaaaaccagaa
gatagcgttgcggatgtgaagaaaaacatagaatcagttcaggggcaagatgtctaccct
gctgcacaacagatgcttatccatcagggcaaagttctcaaggacgctacgacgctcgag
gaaaacaaagttgctgaaaatagttttgtggtcattatgctttccaagaataaggtctca
tcaactggaacgtcatctataccagcagctccttcaaatacggcacaacctgctggttcc
actgaccaagctagacagacgataacagcacctcaagctactgctgcacttccacaatct
gcttctgagtctcctcctgctcctgctcctgcccctgcccccgtgcctgctgctgctgct
agttctgtaacagatgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttg
gagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagtt
gtgcgtgctttgcgtgctgcatataacaatccagagagagctgttgattacttgtattct
ggtattcctgaacaagctgaaattccgcctgtttcccctacacctgctgctcctgctcct
gccagtggtcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttcc
agtggaccaaatgctaatcctctagatctgttccctcagggcctaacaaatgctggctca
aatgccagtgctggaaatttggattttctacgcagtagtccacagttccaggcccttcga
gcaatggtgcaagccaatccgcaaatattgcagcctatgctccaggagttgggtaagcaa
aatccacatttgatgcggcttattcaagaacatcaaccagacttcctgcgcctcatcaat
gaacctgttgaaggggaggggaatgtgttagggcagacagcaggagcaataccacaagct
gtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatgggatttgat
cgagctttagtattggaagtatactttgcctgcaacaaaaatgaggagctggctgctaac
tatctattagatcacatgcatgagtttgacgaatga
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