Solanum stenotomum: 125849154
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Entry
125849154 CDS
T08385
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125849154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125849154
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125849154
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125849154
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125849154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
125849154
NCBI-ProteinID:
XP_049385133
LinkDB
All DBs
Position
12:complement(6468666..6501226)
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AA seq
689 aa
AA seq
DB search
MDEGEGGLNFDFEGGLDTGPTHPTASVPVIQSFDHTAAAAPSANINPPTVSAAVGGQSDV
GFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKH
TIEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEILQKIQHLASYNYGYSNRFNQN
RNANYSTQTDKSQASQAQNGMSLAVKSTATETPIIQQHQPHQQVQPPQLQGGPTQAQIHP
NGQQNQADRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVEN
VILIFSVNRTRHFQGCGKMASRIGGAANGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKT
HHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLTAESKRQEEKVKG
VNPDNGKDNPDIVPFEDNEEEEEEEEEEESEDEDESFDQGFGPAVLGRGRGTGIAWPPIM
PFGHGPRPPPGMRGFPPGMMGDGFSYGAMTPEGFPMPDHFGMGPRPFGPYGPPFSSDLMF
HGRPPAGGFGMMMGPGRPPFMGGMGPGATGPPRAGRAVGMHPSFVPPSSQPSQYPYRAKR
EQRAPVSDRNDRFSSDQGKGQEMMGSVGGPDGVHMQIGKSEHDNQFGAGNSQKNEESESE
DEAPRRSRHGDGKKKRRDVDEDAATGSEK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggcttgaattttgattttgagggtggcttagacactgggcca
acacacccaactgcatctgttccagtaatacaatctttcgatcacactgcagcagccgct
ccgagtgctaatattaacccgcctactgtctcggcagctgttggcggccaaagcgatgta
ggatttgttggaaatcgtcggagtttcaggcagactgtttgccgccactggctgcggtca
ctgtgtatgaagggtgatgcctgcggcttccttcaccagtatgataaatcacgaatgccc
atttgtcgcttctttcgactctatggtgagtgccgtgaacaggactgtgtttataagcat
acgattgaggatatcaaggaatgcaacatgtacaaattggggttttgtccaaatggtcct
gattgtcgatatagacatgcaaagatgcctgggcctccacctccagtggaagaaatcctt
cagaaaattcagcatctggcatcctacaactatggttactcaaacaggtttaatcaaaat
cgaaatgctaattattcaacccagacagacaaatctcaggcttcacaagcacagaatgga
atgagtcttgctgttaaatctacagcaactgagacacccattatacaacagcaccagccg
catcaacaagttcagccacctcaactacaggggggcccaacgcaagcacaaattcatccc
aatggccagcaaaatcaagctgatagaactgcagtagtcctgcctcaaggaacttctagg
tactttatagttaaaagctgcaaccgtgagaatcttgaattgtcagtacaacaaggagtt
tgggcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactctgtggaaaat
gtcattctgatattttcagtcaaccggaccagacattttcagggttgtggaaagatggca
tctagaattggtggcgctgctaatggaggaaactggaagcatgaacatggaactgctcat
tatggacgtaatttttcagtgaaatggttgaagctctgtgaactgtccttccagaaaact
caccatttgaggaatccatacaatgagaacttaccagtgaagataagcagagattgtcaa
gaattagagccctctgttggtgagcagttggcttctttgctatatcttgaaccagatagc
gaacttatggcaatctcacttacagcagaatccaagcgacaggaagaaaaggtgaaggga
gtgaaccctgacaatgggaaagataacccagatattgtaccatttgaagacaacgaagaa
gaggaagaggaagaggaagaggaagaaagtgaggacgaggatgaaagctttgatcaaggt
tttggaccagctgtgcttggtagaggaaggggcacgggaattgcatggcctccaattatg
ccttttggacatgggcccaggcctcctcctgggatgcgaggcttccctccaggcatgatg
ggtgatgggttttcttatggagctatgacacctgagggtttcccaatgcctgatcatttt
ggaatgggtccccgaccttttggtccatatggcccaccattttcaagtgatttgatgttt
catggccgccctccagctggtggatttgggatgatgatgggtcctggaaggccccctttc
atgggcggaatgggtccgggagcgacgggcccacccagagctggccgagcagttggaatg
catccatcattcgttccgccctcatctcagccttctcaatatccttatagggctaaaaga
gaacagcgggctccagttagtgacaggaatgatagatttagctcagatcaaggtaagggt
caggaaatgatgggttcagttggtggaccagatggagtacatatgcaaatagggaaatct
gaacacgataaccagtttggtgctggaaacagccaaaaaaatgaggaaagcgaaagtgag
gatgaagcaccaagaagatcaagacatggggatggaaagaagaagaggcgggatgttgat
gaagatgctgcaactggctcagaaaaatag
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