KEGG   Solanum stenotomum: 125849170
Entry
125849170         CDS       T08385                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
sstn  Solanum stenotomum
Pathway
sstn03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    125849170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sstn03019]
    125849170
   03036 Chromosome and associated proteins [BR:sstn03036]
    125849170
Messenger RNA biogenesis [BR:sstn03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     125849170
Chromosome and associated proteins [BR:sstn03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     125849170
    COMPASS/SET1 complex (yeast)
     125849170
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_TEP1_C NBCH_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Cytochrom_D1 Beta-prop_DCAF4 Beta-prop_SCAP eIF2A KNTC1_N VPS11_N Beta-prop_WDR35_TULP_N Beta-prop_HPS5 PQQ_2 PEP5_VPS11_N DUF5812
Other DBs
NCBI-GeneID: 125849170
NCBI-ProteinID: XP_049385152
LinkDB
Position
12:41569050..41576689
AA seq 337 aa
MAGGPTDREDKVSLETTEEILQSMEVGMTFRDYSGRISSMDFHKTSNFLVTASDDESIRL
YDVANATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
RDRHSSKQVVSLSLCYRKEYFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDEQGLV
FAIAFGGYIRMFDARYFDKGPFEIFSVGGDVSDANSVKFSNDGRLVLLTTKDGHIHVLDS
SRGTHLSMYNVQPVSSSSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTDTE
PPMIKWAPGSLMFVTGSSELSFWIPDLSKLAAYVGRK
NT seq 1014 nt   +upstreamnt  +downstreamnt
atggcaggtggaccaactgacagagaagacaaggtctcactagagaccactgaagaaatc
ctacagagcatggaagtcggcatgacatttcgcgactatagtggtagaatcagttcaatg
gatttccataagacatcaaattttctggtgacagccagtgatgatgagtccatacgtcta
tatgatgttgcaaatgcaacgtgtttgaaaactattaatagcaaaaagtacggggtcgat
ctggttagcttcacttctcatccaacaactgtaatatactcctccaagaatggttgggat
gaatctctacgacttctttcattgcatgacaacaagtacttgcggtatttcaagggtcat
cgtgacaggcacagttctaagcaggtcgtctctcttagcttatgctatagaaaggagtat
tttatctctggctcacttgatcgaactgttctactttgggatcaaagagctgagaaatgc
cagggccttcttcgagtgcaaggaagaccggctactgcttatgatgagcaaggccttgta
tttgctattgcttttggaggatatataaggatgtttgacgcacgctatttcgacaaggga
ccttttgaaattttctctgttggtggagatgtatctgatgctaacagcgttaagttcagt
aacgatgggagacttgtgcttttgacaactaaggatgggcatattcatgtgcttgattct
tcccgtggcacacatttatcaatgtataatgtacagcccgtttcaagtagttcaacactg
gaggcatctttcagtccagaaggaatgtttgttatatcaggatcaggtgatggtagtgtt
tatgcttggagtgtccggagcggtaaagaagtagccagttggatgagtacagatactgaa
ccacctatgatcaagtgggctccaggaagcttaatgtttgtgaccggttcttctgagctt
tcattttggatcccggacttgtcaaaattagcagcttatgtgggaagaaaatag

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