Solanum stenotomum: 125849231
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Entry
125849231 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125849231
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
sstn
Solanum stenotomum
Pathway
sstn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125849231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sstn03009
]
125849231
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125849231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrap_D5
Nrap_D4
Nrap
Nrap_D2
Nrap_D3
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
125849231
NCBI-ProteinID:
XP_049385229
LinkDB
All DBs
Position
12:complement(42558244..42570447)
Genome browser
AA seq
1053 aa
AA seq
DB search
MASDTLTYTDSMNFKVRELLKEVQFECSPETTATVDNVVSGIKEAIDKIPEDQVKADLAP
GFVRDINADKVEFTFKKPKSLEICGSYSIHCVTKHDLNVDLFLHLPKECFYEKDYLNYRY
HAKRFLYLCKIKEQLTKSPLIKAVRWSSFQNEARKPILLVYPVVKLIGNAEFVVRIIPAA
TSLFSATKLRLERNNIHTLKQGDALQATPRYNNSILEDLFLEDNAEFVKRTFTGWKELGE
ALILLKVWARQRSSIYAHDCLNGFLVSIILAFLATKPGRHHINSSMNTMQIFRITVDFIA
TSKTWDKGLFIQPQHEKSASNKDMQLFPVVICNSFEDFNLAFRLSHNGFQELRHEASLAV
NCINKCGDGGFDELFITKIDFPARYDYCVRLNLRGNREVSSLGYCLDDEFWRSQEQKVLS
LMDQGLRDRSKSVRVIWRNTSSECNFEEGLSELDNEPLLIGISVNSAEAAFKMTVIGPSP
EERDKALVFRKFWGDKASLRQFRDSRIAEVAVWEHEEWQRHLIIKDIAEHVLSRHLSIPK
EKVVPIVDQLDFCLLHRDVDPISFSKSLLVALEELSKRLLQLNDIPLKVSTVQALDSAAR
LTSVFPPMPHPLAHEKSVGIKLRKPVSTCINPVEVMIQLEGSGSWPMDEIAIEKTKTAFL
LRIAESLQNNWGMMFTATEDDVDVLMSGYAFRLKISHERALGLVTGQSNNSRHQWSLSAD
RKLLLQHQHASKINALRGRYPIYGPIVRLAKRWVSAHLFSTVLTEEAVELLVSNLFLRPL
PFEPPFSRITGFLRFLRLLSEYDWTFSPLIVDFDGDFSTEEKNKINENLMRSREEHEKDK
QKLSPAMFLATKYDIASEAWTRSSPTTAELRRLVAYSTSSANLLTKLILQDGHDSYGWKC
LLRTPLSNYDAVVLLHRDKLPYPQHLLFPSELEQERCVVRGHASKIFHPFFSPGDFKVNS
GELKSKLMVNFDPVRCFITDIEARFPDVVKVWYDAVGGDALGLTLGKASSQKRKHDDSTE
KSTDLLNTLKTIGEVGKGLVRSIHVVKARKRNN
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggatacattaacttacacggactcgatgaactttaaggtgagggaactgttg
aaggaggttcagttcgaatgctcgccggaaaccactgcaactgtggacaatgttgtttct
ggcataaaagaagcaattgataagatccctgaggaccaggttaaggccgacttggcgccg
ggatttgttagagatatcaatgcggataaggtggagttcacatttaagaagccaaaatct
ttggaaatttgcgggagttattctatacattgtgttaccaaacacgatctaaatgtggat
ctttttcttcacttgccaaaggagtgcttttatgaaaaagattacctaaattatcgatac
catgccaaaagattcctttatctctgcaaaatcaaggagcagctgacaaaatctccgtta
atcaaagctgtgaggtggtctagtttccaaaatgaggctcggaaacctattctacttgtc
tatccagttgttaagcttattggaaatgctgaatttgttgtgaggataattcctgctgca
acatctttgttcagtgcaacaaaacttcgccttgagcgaaacaatatccatactctcaaa
caaggagatgctttacaagcaacaccaaggtacaataatagtatattggaggatttgttt
cttgaggataatgcagagtttgtcaaaagaactttcactggatggaaagaattgggggaa
gccttgatactgctaaaagtgtgggctcggcaaaggagttcaatctatgcccatgattgc
ttgaatgggtttctagtctctataatattggccttccttgcaacaaagcctggtaggcat
catatcaacagttccatgaatacaatgcagatatttcgtatcacagtggacttcatcgcc
acctctaagacatgggataaagggctttttattcagccccagcatgaaaaaagtgcttca
aacaaggatatgcagttgtttcctgtggtcatttgcaattcatttgaggacttcaatttg
gcattccgtctgtcacacaatggtttccaagagctgcgccatgaggcttctttggcagtt
aattgcatcaacaaatgtggagatggtggctttgatgagctttttatcacaaagatcgac
tttcccgctagatatgactactgtgtgagattgaacttgaggggaaaccgtgaagtttct
agcttaggatactgcttagatgatgaattttggagatcacaggagcagaaggtactctcc
ctcatggaccaagggttgagagacagatctaagtctgttcgtgttatttggagaaacact
tcatctgaatgcaactttgaagagggactgtcagagctagacaatgagccattgctcatt
gggatttctgtcaactctgcagaggcagccttcaaaatgactgtcataggtcctagccct
gaggaaagagataaggctttagtatttcggaagttttggggagataaggcgtcacttcga
cagtttcgtgatagtagaatagctgaagttgcagtatgggaacatgaggagtggcaaagg
catctcatcataaaagatattgccgagcatgttttgtctaggcatctttccatacccaaa
gaaaaagttgttcctattgtggatcaacttgatttttgtctcctccacagggatgtagat
cctatatctttctcaaaaagtttgctggtagcacttgaagagctgtcaaagcgtttgctt
cagctgaatgacattccactaaaggtgtcgactgtgcaagctctagactcagctgctagg
ttgacatctgtctttccgcccatgcctcatcctctggcacatgagaagagtgttggcata
aaactaaggaagcccgtttcaacctgtataaatccagttgaagttatgattcagcttgaa
gggtctggaagttggccaatggatgaaattgctatagagaagacaaaaactgcatttctt
cttagaattgctgagagtctgcagaacaattgggggatgatgtttacagctacggaagat
gatgtagatgttctaatgtctggctatgcattccgccttaaaatttctcatgaaagggct
cttggtttggtgactgggcaaagtaataacagtcgacatcaatggagcctctctgctgac
agaaaacttcttctgcaacaccaacatgcgagcaagatcaatgctttaaggggtcgttat
cctatatatggaccaatagttcggctagctaaaagatgggtctctgcacacctattttcc
acagtgctgacagaggaggcagttgaactattggtctcaaatcttttcttgagacctttg
ccatttgaacctcctttctcccgaattacaggatttttgaggttcttacgattattgtcc
gaatatgattggaccttttctcccttaatcgttgattttgatggcgacttttcaactgag
gagaaaaataaaattaatgagaatctcatgagaagtagagaagagcatgaaaaggacaaa
cagaaattaagtcctgcaatgttcttagctactaaatatgacatcgcatctgaagcgtgg
acaagatcctcaccaactacagcagagctaagaagactggtggcttattcaactagcagt
gcaaatttgttgaccaaactgattttgcaagatggacatgattcttatggatggaaatgt
cttctccgcactcctctgagcaactatgatgctgttgttcttctccacagggacaaattg
ccttacccccagcatcttctctttccatccgaacttgaacaagagcggtgtgtggtgcgt
gggcatgcatccaagattttccatcctttcttttctcctggagacttcaaagtgaactct
ggggaactgaaaagtaagctgatggtgaattttgatccagtaaggtgctttattaccgat
attgaggcaagatttcccgatgtggtcaaggtgtggtacgatgctgtgggtggtgatgct
cttggtcttacattaggaaaagcaagttcacagaaacggaagcatgatgactccacggag
aagagcacagatcttttgaatacgctaaaaaccataggcgaggttgggaaaggccttgtg
agaagtattcatgttgttaaggcccgaaaacgtaataattga
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