Solanum stenotomum: 125849232
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Entry
125849232 CDS
T08385
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
sstn
Solanum stenotomum
Pathway
sstn04142
Lysosome biogenesis
sstn04145
Phagocytosis
sstn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
125849232
04142 Lysosome biogenesis
125849232
04148 Efferocytosis
125849232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125849232
Membrane trafficking [BR:
sstn04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125849232
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_WDR35
TPR_MalT
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
125849232
NCBI-ProteinID:
XP_049385230
LinkDB
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Position
12:complement(42545446..42557151)
Genome browser
AA seq
1001 aa
AA seq
DB search
MVHTAYDTFQLLDNSPSKIDAIESYRSNLLIACSDGSLRVYVPESSVSDQSDFHSETLEL
HQGPYVLERTLNGFSRRQMLAMEVLVSRELLLSLSESIVLHGLPNLETLSVITKAKGANV
YSWDDKKGLLCFGRQKRVCIYKHDGGSGFVEVKEFGVPDTVKSMSWCGENICLGIRREYK
ILNTTNGVLSEVFSSGRIAAPLVVALPPGELLLGKDNIGVLVNQNGKLIQEGRICWSEAP
AVVIIQKPYAIGLLGRHVEIRSLRVPYPLIQTVVLRNVRHLVRSNNTVIVALDNSVFGFF
PVPLGAQIVQLTASGNLEEALALCKLLPPEDSSLRSSKEQSIHMRYAHFLFENGSYEEAM
EHFVASQVEITYVLALYPSIIVPKSSCIPEPQKFADVADAPYLSRGSSGLSDDLDSPPSD
VFESDEMDIESKKMSHNTLMALIKYLQKKRYSVIEKATTEGTEEVVSDAVGDNFISYGTN
RSKKPTKGRIHIPITSIARDMAAILDTALLQALFLTGQSSAATDFLKALNYCDVKICDAF
LQERSQYACQIELYRCNSMHHEALKLLHQLVEESKSEQTPVELLMKFKPDMIIEYLKPLC
ATDPMLVLEFSLPVLESCPMQTIELFLSGNIPADLVNSYLKQHAPDMQATYLELMLSMNE
NSISGNLQNEMVQIYLSEVLDFHAEHNSQQKWDEKTCPPPRKKLLSALEGMSGYNPEVLL
KRLPPDALYEERAILLGKMNKHELSLSIYVHKLHVPELALSYCDRVYDSGLQQHSAKSYG
NIYQTLLQIYLNPTKTTKKFEKKITNLVSAQSPGIPKVGLVTTAKVKGGRSKKIAEIGGA
EDTRFSLSGTDSGRSDGDTEDAAKEGGSTIMLDQVLDLLSRRWDRIHGAQALKLLPRDTK
LQNLLPFLGPLLRKSSEAYRNFSVIKSLRESENLQVKDELYNQRKAVLKITSNSMCSLCN
KKVGTSVFAVYPNGKTIVHFVCFRDSQNMEAVGRGSQLRKR
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacactgcctacgataccttccaactcctcgataattctccctccaaaatcgat
gccattgaatcataccgctcaaatttgctcatcgcatgttccgatggatcgctccgtgtt
tacgttccagaatcctccgtttccgatcaatctgatttccattctgaaaccttagagctt
catcaaggaccctatgtgcttgaaagaactctgaatggattctccagaagacaaatgctg
gccatggaagtcctcgtctcacgagaacttctgctttccctctccgagtctatcgtgtta
catgggttgcctaatttggagactttgtctgtgattactaaggctaaaggtgcaaatgta
tattcgtgggatgataaaaaagggttactttgcttcgggaggcaaaagagagtctgtatt
tacaaacacgacggggggagtggatttgtggaggtgaaagaatttggagttcctgacaca
gttaagtcgatgtcatggtgtggtgagaatatttgcttggggattagaagagagtacaag
atattgaataccacgaatggtgtattgtctgaggtgttttcttcagggaggatcgccgca
cctcttgtggtggctcttccacctggagaacttcttttgggcaaggataatattggtgtc
ttagttaaccaaaatgggaagttgatccaagaagggaggatttgttggtctgaggctcct
gcagttgttattatccagaagccgtatgcaataggtcttttggggcgacatgttgagata
cgttctcttcgtgttccttatcctttgattcaaacagttgtccttcggaatgttcgtcat
cttgttcgaagcaacaatactgtgattgttgctcttgataattctgtttttggatttttt
cctgtgcctcttggtgcgcagattgtacaactaacagcatctggaaacttagaggaagcc
ttggctttgtgcaaattgctaccaccagaagattcaagtcttagatcttcaaaggagcaa
tcaattcatatgagatatgcgcactttctatttgaaaatgggagctatgaagaagcaatg
gaacattttgtggcatctcaagttgaaatcacttatgtgctcgccttatatccatccatt
attgttccaaaatcatcttgcatacctgaaccacagaaatttgcagatgttgcagatgca
ccatatctctcccgaggctcttctggtctgtcagatgatctagattctccgccttcggat
gtatttgaatctgatgaaatggatatagagtccaagaaaatgagccacaacactttgatg
gctctgattaagtatttgcagaaaaagagatacagtgtcattgagaaagccacaactgag
ggaactgaagaagtggtttcagatgctgttggagataatttcatttcttatggaactaac
cgatccaaaaaaccaaccaagggcagaattcatattcctatcacttccatcgctagggac
atggctgcaatactggacactgcacttcttcaagctctgtttttaactggacagtcctct
gctgctacagattttctgaaagctctcaactactgtgatgtgaaaatatgcgatgcgttc
ctgcaagaaagaagccagtatgcttgtcagatagaactttatagatgcaattcaatgcat
catgaagcactgaaacttcttcatcaactagtagaagagtccaagtcagagcaaactcct
gtagagctcttaatgaagttcaagcctgatatgatcattgaatatctcaaacccctttgt
gcaactgaccccatgcttgtcctggagttctcactgcctgttcttgaaagctgtcctatg
caaaccattgagctatttttgtctggtaacattccagcagacttggtgaattcttactta
aagcagcatgctccagacatgcaggcaacatatctagaactcatgctttccatgaatgaa
aatagcatctcagggaatctgcagaatgaaatggtgcaaatttatctctcagaagtgctt
gattttcatgctgaacataattcccagcaaaagtgggatgagaaaacatgtcctccacca
aggaaaaagctactgtctgctttggagggtatgtctggatataatccagaggtgttgctg
aagagacttccaccagatgctctgtatgaagaacgtgcaattcttttggggaaaatgaat
aaacatgaactttccctgtcaatttatgtgcacaagcttcatgttcccgaacttgcactg
tcctattgtgaccgggtgtacgattcaggacttcaacaacattcagcaaaatcttacgga
aacatttaccagactctactgcaaatctatctaaatcctacgaagacaacaaaaaaattt
gagaagaaaattactaatctggtatcagctcagagccctgggattccaaaagttggttta
gtaactacagcaaaggtaaaaggaggccgctccaagaaaattgctgaaattgggggcgct
gaggacactcgattcagtctaagtggcacagacagtgggaggagtgatggagatacagaa
gatgctgccaaggaaggtggttctactattatgctagatcaggtacttgatcttttgagc
agaaggtgggatcgaatccatggcgcccaagcactgaaactgctgccaagggatactaag
ctacagaacttgcttccatttcttggacctcttctgaggaaatccagtgaagcatatcgg
aacttctcagtgataaaaagcttgagagaaagtgaaaacctacaggttaaagatgaactg
tataaccaaagaaaagcagttttgaagatcacaagcaatagcatgtgctctctttgcaac
aagaaggttggcaccagtgtctttgcagtctatcctaatggtaagacaattgtgcacttt
gtttgctttagagattcacagaatatggaggcagttggaagaggctctcagttgaggaaa
agatga
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