Solanum stenotomum: 125849299
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Entry
125849299 CDS
T08385
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125849299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125849299
03041 Spliceosome [BR:
sstn03041
]
125849299
03032 DNA replication proteins [BR:
sstn03032
]
125849299
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
125849299
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
Sm proteins
125849299
U2 snRNP components
125849299
Complex B
U1 snRNP components
125849299
U4/U6.U5 tri-snRNP components
125849299
Complex C
U2 snRNP components
125849299
DNA replication proteins [BR:
sstn03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
125849299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
125849299
NCBI-ProteinID:
XP_049385319
LinkDB
All DBs
Position
12:complement(16100093..16104555)
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLETITYTAKDGRVSQL
EHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKGKGSSLGVGRGRAMAMRAKAQAAGRGA
APGRGVVPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagcttaggcataccggtgaaacttctacacgaggcaacagggcatatagta
actgtagagatgaaaagcggcgagctttatagaggaagtatggtcgagtgcgaggacaac
tggaattgccagctcgaaaccatcacttacactgctaaagatgggagggtgtcacaactg
gaacatgtttttatcagaggcagtaaagtcaggttcatgataattccagatatgcttaag
aatgctcccatgttcaagcgtctagaagctagaattaagggcaaaggttcatcacttggt
gttggacggggacgtgctatggcaatgcgagctaaagctcaggcagcaggtcgtggagca
gcacctggtcggggtgttgtaccccctgtaagaaggtga
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