Solanum stenotomum: 125850480
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Entry
125850480 CDS
T08385
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sstn03016
]
125850480
Enzymes [BR:
sstn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
125850480
Transfer RNA biogenesis [BR:
sstn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
125850480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
125850480
NCBI-ProteinID:
XP_049386284
LinkDB
All DBs
Position
Unknown
AA seq
793 aa
AA seq
DB search
MAVRAMNSCVIFRSAATPPLAVSRRCCCLRLLTTSSRHRNRSNSHSFLRCAPYPLSHVTV
RSYSVQNLVEMVMEELASIHKRGRVRATSKLELASTGELLEDKLKKGTLQKGLLLEFKKD
SERLLLAVALKPDGKKNWMVSDQNGITTSIKPQQVTFIVPGAENFEPTEISEFVQKAHDN
LDPALLEFAWNELLEKNKSVTVQELAEMIFGSAEPLETYCAHLLLSRDEVYFAVLESKGL
SVYGPRTANQVDELLRRKLAKEASEKEFEELIQLLRSAKQMPPQDKPPRSSWKAEEKTWH
KIESLEAFAIDSCKNDDQKKTAGMILKAMGQAKTSSAAVNLLIDIGYFPVHVNLDLLKLN
LPTDHRDEILSAAESLLSASTDLDEADRIDLTPLKVYAIDVDEADELDDALSATRLQDGR
IKIWIHIADPTSLVQPGSIIDKDARRRGTSIFLPTATYPMFPERLAMEGMSLQQGKLCNA
VSVSVVLRSDGSIAEYSVENSIIKPTYMLTYESATELLHLNLEEEIELKILSEAAALRLR
WRREQGAIDTATIETRIKVTNPDHPEPSIKLYVENQADAAMRLVSEMMILCGEVIATFGS
HNNIPLPYRGQPQSNIDASAFAHLPEGPVRSAAIVRTMRAAEMDFRNPIRHGVLGLPGYV
QFTSPIRRYMDLAAHYQVKAFLSGDPLPLSAGELEGIASSVNMTTRVVRRLSSSSLRYWI
LEYLRRQPKGKRYHALVLRFIKDRIAAILLTEIGIQASSWVSIGVQIGDEVDVQVEEAHP
RDDILSLKEVEAV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcgcgccatgaacagctgcgtaattttccgttccgccgcaacgccgccgctc
gccgtatcccgccgatgctgctgtctccgtctattaacaacctcttctcgacatagaaac
cgttcgaattcacattcatttctccgttgtgcgccttatcctctcagccatgtcaccgtt
cgtagctattcagttcaaaacctcgtcgaaatggttatggaagagcttgcttctatacac
aaacgtggcagagttcgtgctactagcaagctggaattagcaagcacaggagagctgctt
gaggacaagttgaagaaagggacactacaaaaaggattattgctggagttcaagaaggat
tctgaaaggttgttgctagcagttgctcttaaacctgacggaaaaaagaattggatggtc
tctgatcagaatgggattacaacctccattaagccacagcaagtgacttttattgttcct
ggtgctgaaaattttgagcccacagaaatatcagaatttgtacagaaagctcatgataac
ttggatccagcactgcttgaatttgcatggaatgagcttcttgagaaaaataaatcagta
acagttcaagaactagctgagatgatatttggtagtgcggagcctcttgagacctattgc
gcccacctgctgttatcaagagatgaggtgtacttcgcagttctggagtcaaaaggtctt
tctgtatatggacctcggactgctaaccaggtggatgaacttttgcgaaggaagcttgct
aaagaggcctcagagaaggagtttgaggaacttatacagcttctgcgatctgctaaacaa
atgcctcctcaagacaaacccccaagatcttcttggaaggctgaagagaaaacttggcac
aagatagagtctcttgaagcttttgccattgattcttgcaaaaacgacgatcaaaagaaa
acagctgggatgattttgaaggccatgggacaggcaaagacttcatctgcagcagtgaat
ctcctcatagatattgggtattttcctgtacatgtaaatctcgatttgttaaagttgaac
ctccctactgatcatcgggatgagattctgtcggccgcagagagtcttttgtctgcatcg
actgaccttgatgaggctgatagaatagacctgactcccttgaaggtttacgcgattgat
gttgatgaggctgatgagcttgatgacgcattgagtgcaacaaggttgcaggacggccgg
attaaaatttggatacatattgcagatcctactagtttagttcagccaggaagcataata
gacaaggatgcaagaagaagaggaacttcaatattcttgcctactgcaacatatccaatg
ttccctgaaaggttggccatggaaggcatgagtctgcagcaaggaaagctgtgtaatgct
gtttctgtgtctgttgtgctgcgttctgatggcagcattgcagaatactcagtggaaaac
tcaattatcaaaccgacatatatgttgacatatgagagtgcaacggagctccttcatttg
aatcttgaagaagagattgaactgaaaattctttctgaagcagctgcactccggttaaga
tggcgtcgagaacagggtgctatagacacagccaccatagaaacccgaattaaggtgact
aatccagatcatccagagccgtcaatcaagctgtatgttgaaaaccaggctgatgcagct
atgaggcttgtttctgagatgatgatactctgtggggaagttatagccacttttggttct
cataacaacatccctttaccataccgaggacagcctcaatctaatatcgacgcttctgca
tttgcacaccttccagaaggacccgttaggagtgctgctattgttcgaactatgcgtgca
gctgaaatggatttcaggaatcctatacgccatggggtgttgggacttccaggctatgtt
cagtttacctcccctattcgaagatatatggatctcgcagcccattatcaggtaaaagcc
tttcttagtggtgatcctcttcctctctcagctggggagctagaaggcattgcgtcttca
gtaaacatgacaaccagagttgtaaggaggctctccagcagcagtcttcgttattggata
ttggaatacttgagaaggcagccgaaagggaaacggtatcatgccctggtccttagattc
atcaaagaccgaatagccgcaatactgttgacggagattggaattcaagcttcttcgtgg
gtgtctattggcgtacaaattggtgatgaagtagacgtgcaagttgaagaagctcatcca
cgtgatgatattctctctcttaaggaggttgaggctgtatag
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