Solanum stenotomum: 125850528
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Entry
125850528 CDS
T08385
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
sstn
Solanum stenotomum
Pathway
sstn03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125850528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125850528
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125850528
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
125850528
RNA polymerase I system
125850528
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
125850528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW4_SPT5
KOW6_SPT51-2
KOW2_Spt5
KOW7_SPT5
KOW
Spt5_N
KOWx_SPT5
KOW5_SPT5
GPKOW_C
DUF4438
KOW6_SPT5
UCH_N
Motif
Other DBs
NCBI-GeneID:
125850528
NCBI-ProteinID:
XP_049386340
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MPRQRDYDDDDDEPEEEEDDVYEEEEEEEEEDDRGKAGRKRRRSDFIDDAAEEDEDEDED
DDDEDYGGGGGGGGGGRRRPKRRTGSEFFDLEAAVDSDEDEEEEEGEDDFIVDSGADIPD
EDGARREYRHRLLPHEDQEEDLEELTRSIKQRYARSPHVEYDEEATDVEQQALLPSVRDP
KLWMVKCAIGREREVAVCLMQKAIDRGPELQIRSVVALDHLKNYIYIEADKEAHVREACK
GMRNIYASAKIMLVPIKEMTDVLSVESKAVDLARDAWVRMKMGTYKGDLAKVMDVDNVRQ
KVVVKLIPRIDLQALANKLEGRDAPKKKAFIPPPRFMNIDEAREMNLRVERRRDPMSGDY
FENIGGMMFKDGFLYKTVSMKSISTLNIQPTFDELEKFRQTGEGGDGDMASLSTLFANRK
KGHFMKGDRVIVVKGDLRNLKGHVEKVEEDTVHIRPNQKDLPLTLAFSDKELCKYFDLGN
HVKVVSGSSEGATGMVVSVQGHVVNLVSDTTKELLRVFADNVVESSEVTSGLTRIGEYEL
HDLVILDNKSFGVIIRVDSEAFQVLKGVPDRPEVALVRLREIKAKVEKKGNAQDRYKNHL
AVKDVVKVLEGPCKGKQGPVEHIFRGVVFIYDRHHLEHAGYICAKTQSCVLVGGSRANGD
RNGNPMSSRFAHMRAPPRAPQSPMRSSRGGPPMSYGGRHRGGRGQDALVGADVKIRLGPF
KGCKGRVVDIKGTSVRVELEAQMKVVTVDRNHISDNVNVSVPFREPSRYGLGSETPSHPS
RTPLHPFMTPMRDPGATPIHDGMRTPMRDRAWNPMSPPRDNWEEGNPASWGSSPQYQPSS
PRSRAYEAPTPGSGWTNTPSGNYSDAGTPRDNGSAYANAPSPYLPSTPGGQPPMTPSSAY
IPGTPGGQPMTPGSGGLDMMSPIGGGDTEGPWLLPDILVNVRKSNDDTVIGVVHEVLADG
SCSVGLGLSGNGDTIIVHPTEIDIIVPKKSDKIKIMGGPQRGATGKLIGVDGTDGIVKVD
DTLDVKILDMVLLAKLAHA
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccaacgtgactacgacgacgacgacgatgaaccagaggaggaagaagatgac
gtgtatgaagaggaggaggaggaggaggaagaggacgatagagggaaggctggacggaaa
cggcgtagatcagattttattgatgatgcggcggaggaagatgaggatgaggatgaggac
gatgatgatgaagattatggcggtggaggtggaggcggaggaggtggtagaagacgacct
aaaaggaggactggttcggaattttttgacctagaagctgctgtagatagtgacgaggat
gaggaggaagaagaaggcgaagatgatttcatagtagatagtggagcagatatacctgac
gaggatggtgccagacgtgaatatcgtcaccgactgttgccgcatgaggaccaagaagaa
gaccttgaggagcttacgagaagcattaagcaaagatatgcaaggtcacctcatgttgag
tatgatgaggaagcaacagatgttgagcagcaagctctcttgccatctgtcagggatcca
aagctctggatggtgaaatgtgcgattggccgtgagagagaggttgcggtttgcctaatg
caaaaggcaattgatagaggacctgaattgcaaattcgatcagttgtagcccttgatcat
cttaagaactatatatacatagaagcggacaaagaagcccacgtgagggaggcgtgcaag
ggtatgcgcaatatatatgcctctgcaaaaataatgctggtccccataaaagagatgact
gatgtcctttcagttgaaagcaaagcggttgatcttgccagggatgcttgggtcagaatg
aagatgggaacttacaagggagaccttgcaaaggttatggatgtagataatgtgagacag
aaagtcgtcgtgaaattaatcccaaggattgatttacaggctcttgcaaacaagttggaa
gggagggatgctccaaagaaaaaggcatttattcctccaccacgctttatgaatatcgat
gaagcaagagagatgaacctacgtgtggaacgtaggcgagacccgatgtcaggtgactat
tttgagaatattggaggtatgatgttcaaagatggtttcttgtataagacagtgtcaatg
aaatcaatcagcaccctgaacatacagccaacttttgatgaacttgagaaattccggcaa
actggtgagggtggggatggcgatatggctagtctatctactttgtttgcaaataggaaa
aaaggtcattttatgaagggtgaccgcgttattgtggtgaagggggatctcagaaacttg
aaaggccatgttgagaaagtcgaagaagatactgttcatatcagaccaaatcagaaagac
cttcctttgactttggcttttagtgacaaagagctatgcaagtactttgatcttggaaat
cacgtgaaagtagtatctggttcatctgaaggtgcaaccggtatggttgtctctgttcag
ggacatgtggttaacctggtatcagatacaacaaaggagcttctccgtgtatttgccgat
aatgttgttgagagctctgaagtaacatctggtctcactcgtattggggaatatgagctc
catgatcttgtaatactagacaataagagcttcggtgtgattattcgtgtagacagcgaa
gccttccaggtccttaagggtgtgcctgatagacctgaagtagcacttgttagacttaga
gagatcaaagcgaaagttgaaaagaaagggaatgcccaagatcggtataagaaccacctg
gcggtgaaagacgtggtaaaagttcttgagggtccttgtaaaggaaaacaaggtcctgta
gaacacatcttcagaggagttgtttttatttatgatcgtcatcaccttgagcatgctggt
tatatttgtgccaaaacccaatcttgtgtgttggttggtggctcacgggcaaatggtgat
agaaatggtaaccccatgtcatcaagatttgcgcatatgagagctccaccacgtgctcct
caatctccaatgagatcatctagaggtggtccacctatgagttatggaggcagacataga
ggtggaagagggcaggatgctttagttggagctgatgtgaaaattcgccttggaccattc
aaaggttgtaaagggcgtgttgttgacatcaaaggaacttcagtccgagttgaacttgaa
gcccagatgaaagttgttacagttgatcgcaaccatatctccgataatgttaacgtgtca
gtgccgtttagggaaccatctagatatggtttgggaagtgaaacaccatcacatccttct
aggactccactgcacccatttatgacacctatgagagatcctggagcaacacctatccat
gatggcatgaggacgccaatgcgtgacagagcatggaatccaatgagtccacctagggat
aattgggaagagggaaaccctgcttcctgggggtcaagtccgcaatatcagccatctagt
cctcgttcaagggcgtatgaagcacctactcctggttctggttggactaatactcctagt
ggtaattacagtgatgctgggaccccaagagacaatggttctgcatatgctaatgctcca
agtccttacttgccatcaactcctggtggacaaccaccaatgacaccaagttcagcatat
atacctggtactcctggcgggcagccaatgactcctggaagtggtgggctggatatgatg
tcacctataggaggtggggatacagaaggtccttggctcttgcctgatatcttggtcaat
gtacgaaagtccaatgatgatactgtcatcggagttgtccatgaggtgctcgcggatggt
tcctgtagtgttggtcttggattaagtggcaatggtgacactatcattgtgcacccaact
gaaattgatataattgtaccaaagaagtctgataaaatcaaaatcatgggtggtccccaa
cgtggtgcaaccggtaagcttattggtgttgatggcactgatgggattgtaaaggtggat
gatacccttgatgttaaaattttagacatggtacttttggccaagttagcgcatgcatag
DBGET
integrated database retrieval system
