Solanum stenotomum: 125851234
Help
Entry
125851234 CDS
T08385
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
sstn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125851234
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125851234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125851234
04121 Ubiquitin system [BR:
sstn04121
]
125851234
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125851234
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125851234
Spliceosome [BR:
sstn03041
]
Complex B
Other components
Prp19 complex
125851234
Complex C
Prp19-CDC5 complex
125851234
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
U-box type E3
125851234
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
125851234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_EML_2
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_DCAF12
PROPPIN
U-box
PEP5_VPS11_N
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_VPS8
Beta-prop_DCAF4
zf-Nse
KNTC1_N
Beta-prop_ACSF4
WD40_like
WDR54
V_ATPase_I_N
PAS_11
B_lectin
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
125851234
NCBI-ProteinID:
XP_049386964
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTADDIIPVKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARGLLAQAERQIPMAATTAVGTTTVSNGKRAAEDEDTGPDGKKIRPGISHSVIETL
TECNAGLSQQRKKRQIPATLAPVDALARYTQLNSFPLHKTNKPGILSLDIHYAKDIIATG
GVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFAAEGELVVSGSADKTVRVWQSSENGNYD
CRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLASGLCLTQVADASESEGYTSAA
FHPDGLILGTGTSGSLVKIWDVKSQANVAKFDGHVGSVTAISFSENGYFLATAAHDGVKL
WDLRKLKNFRTFAPYDENTPTQSVEFDHSGSYLALGGSDIRVYQVASVKADWNHIKTFPD
LSGTGKATCLKFGPDATYIAVGSMDRNLRIFGLPGEDQMEG
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccgga
ctccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctatt
actggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaa
ccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgg
gatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagag
ctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaag
gaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagcc
actacagcagttggtactactactgtaagcaatgggaaaagagctgctgaggatgaggat
acgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactctt
actgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagataccggcaacattg
gcccctgtggatgctttggcgagatatacccaactgaatagttttcctcttcacaaaacc
aacaaaccgggcattttgtctttggatattcattatgctaaggacataattgctactggt
ggagttgattcaaatgctgtggtctttgatcgaccttcaggacagatcatatcaacacta
agtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactcgtggtc
tcaggttcagcagataagacagttcgtgtgtggcaaagttctgaaaatggaaattatgac
tgtaggcatgtcttgaaggatcatacagcagaggtgcaagctgtcactgtccatgcaacc
aataattattttgttactgcttctctcgatagcacgtggtgcttttatgatcttgcttct
ggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttctgcagct
ttccaccctgatggtctgatccttggaacagggacttcagggtctctggtcaagatatgg
gatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgct
atttccttttcagaaaatggttatttcttagctactgctgctcatgatggtgttaaactt
tgggatttacgcaaattgaagaactttagaactttcgctccttacgatgaaaacacacca
actcagtcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatata
cgagtttatcaagtcgccagtgtcaaggctgattggaatcacatcaaaaccttccccgac
ttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcaacgtacatagct
gtcggatctatggaccgcaatttaagaatattcgggctgcctggtgaggatcaaatggag
ggttag
DBGET
integrated database retrieval system
