Solanum stenotomum: 125853093
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Entry
125853093 CDS
T08385
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125853093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125853093
Enzymes [BR:
sstn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125853093
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125853093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125853093
NCBI-ProteinID:
XP_049388723
LinkDB
All DBs
Position
Unknown
AA seq
388 aa
AA seq
DB search
MKVESAVGFRHVIDLLSSKRKLIVDHNCFLDVAHMYSKFIGPLPSTAEDYVSSLQKLFPT
IVDTKILLNANGVFRQTLNKSNTSLSRAFVSICPHIALGIKTSSLADRPCVDVEVQVDEK
RSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGIDFTLHVLGGDLAKETKLQNYINRLYLS
WVSGNVIDLSSGKCTPDSSASSNLKSRYQDISFPSIILLWGLPSKLKAKEIRACIAQAFG
PNSVSSVYHLDESAVFIQFSKPELVSKFLELKETLSRNSDPISVLHPLSNILNGENTHAA
TYDVYQQICSSSISKKLFADQAEAVGIKHKTVLSRAERGKRGNQVFDKETDVRMFDEKAD
DLMSSPYGCSETDRSAESFYLDEVLASK
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcgaatctgctgttggatttcgacatgttattgatcttctttcatcaaagcga
aagttgattgtcgatcacaattgctttcttgatgtggcgcatatgtacagtaaattcatt
ggtccactaccttcaaccgctgaggattatgtatcttcccttcagaagctctttcctacc
atagtggacaccaagatactcttgaatgcaaacggtgtttttcgacagactttaaataaa
agcaacacctcactatccagagcatttgtctctatctgtcctcatattgctttaggtatc
aaaacatctagtttggctgatagaccatgtgtagacgtggaggttcaagtagatgaaaaa
agatcctcgaactggaactcaggagccaagcatgaagctggatatgatgcattcatgact
ggatgcatttttgcacaggcgtgcaatcatctaggcattgatttcaccctccatgtgctt
ggtggagatttagcaaaggagacaaagcttcagaattatatcaaccgcctttaccttagt
tgggttagtggtaacgtcattgatctaagtagtgggaaatgtacaccagactcctcagct
tctagtaacctcaaaagtcggtaccaggatatctcatttcctagcatcattctgttgtgg
ggattgccatctaaactaaaagcaaaggagataagagcttgtatagcacaagcctttggc
ccaaattctgtttcctcagtctaccatttggatgaaagcgctgtctttattcagtttagc
aagccagaactggtttctaagtttctagaattgaaggaaactctaagtaggaacagtgat
ccaatttccgtgttgcatcctctttcaaatattctgaacggagaaaacactcacgcagct
acctacgatgtatatcaacaaatatgcagttcatccatctcaaagaaattattcgcagat
caagctgaagctgttggtatcaagcacaaaacagtgttgtccagggcagaacgagggaaa
aggggaaaccaggtatttgataaagaaacggatgttaggatgttcgatgagaaagcagat
gatctgatgagttcaccatatggctgctctgaaacagatcgatcagcggaatctttttac
ctagatgaagttctggcaagcaaatag
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