Solanum stenotomum: 125853167
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Entry
125853167 CDS
T08385
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
sstn
Solanum stenotomum
Pathway
sstn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125853167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125853167
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125853167
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
nSTAND_NTPase5
Tudor_KDM3B
YL1
Motif
Other DBs
NCBI-GeneID:
125853167
NCBI-ProteinID:
XP_049388799
LinkDB
All DBs
Position
1:24942167..24952084
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AA seq
1306 aa
AA seq
DB search
MASSRRSSNGRSPLVNQQSQITSFFSKTLSSSSSPSPLLPKQIPEKSNPNPNTKRKPNLS
PSTSPCASPTTPSPLNAKRKITVPISAVVDLKPSYGQEVVDKRVKVYWPLDKIWYEGCVK
SFDSSSGEHLVKYDDGDEEMIDLAEEKIEWVKAPVRKLRRLRRSSVVEEEEEEKLEDLKS
VEDDSEDEDWGKDAAKQVSEGEDASEDMDLEIEEEDDDVVGPKSRKVSGSKVVARKRKTP
EGEKLTPSSSKKSKPVADTSADSKMHSAVIGVNGKESVATNEDCAKVSNNDNVLLCGAAD
RFGQRETQKFPFLGKDRKDANRRSPGDANYDPRTIYLPPNFLKGLTGGQRQWWEFKSKHM
DKVLFFKMGKFYELYEMDAHVGAQELHLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVL
VVEQTETPEQLENRRREMGSKDKVVRREICAVVTKGTLTEGEMLAANPDASYLMAVTESS
LTAAFQQGKRTYGVCMVDISTGKIIIGQFEDDSDCSALCCLLSELRPVEIIKPAKLLSHE
TERVLMRHTRNPLVNELVPLSEFWDAERTICEVKGVYRNMSLSLLASSPNEMSTHESTAS
EEDGERNFLPDVLCELINLGGNGSYALSALGGVLYYLKQAFLDESLLKFAKFELLPLSGF
CDGTQKWNMVLDAAALENLEIFENSRNGDSSGTLYAQINHCITAFGKRMLRSWLARPLYR
PESIRERQDAVAGLKGINLPSVLEFRKELSRLPDMERLLARLFGSSEANGRNANKVTLYE
DAAKKQLQEFISALRGCESMVHACSSLGVILGNTDSKLLHHLLTLGNGLPDVDSVLKHFK
DAFDWVEANNSGRIIPHEGVDEEYDAACKQVQEVELKLSKHLKEQRKLLGDSSIDYVTIG
KDAYLLEVPESLCRSIPKEYELQSSKKGYFRYWNPVLKKLIGELSHADSEKESKLKSILR
RLIGRFCEHHNKWRELVSITAELDVLISLSIASDYYEGPTCRPNIKSVPSQDDVPVLLAE
NLGHPVLRSDSLDKGTFVSNNVSLGGPPNASFILLTGPNMGGKSTLLRQVCMAVILAQVG
ADVPASSFDISPVDRIFVRMGAKDHIMAGQSTFLTELLETASMLSMASRNSLVALDELGR
GTATSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLSIDYQKDSRVSLCHMACQIGKGSGG
LEEVTFLYRLTPGACPKSYGVNVARLAGLPENVLQRAAAKSEALETYGHNKQSEENPSEN
LTGKTAALLQNLINLIVHNKYDDNKGVILGELNGLQNRARIVLEQN
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcgccgctccagcaatggcagatcaccgctagtcaatcaacagagccaa
atcacttcttttttctccaaaaccctctcgtcttcttcttctccttcacctcttctcccc
aaacaaattccagaaaaatctaaccctaaccctaatactaaacgtaaacctaatcttagt
cctagtaccagtccttgtgctagtcctacgactccttctcctctaaacgcaaagcggaag
attactgtgcctatttcagccgttgttgaccttaagccatcatatggacaagaggtagtg
gacaaaagagttaaggtttactggccgttggataaaatatggtatgaaggctgtgtgaag
tcttttgacagtagttctggtgagcatttggttaagtatgatgatggtgatgaggaaatg
attgatttagctgaagaaaaaattgaatgggtgaaggcacctgtgaggaagttgaggcgg
ttgcggagatcttcggtggtggaagaggaggaggaagagaaattggaggatttaaagagt
gttgaggatgattctgaggatgaagattggggaaaggatgctgctaaacaagtgtctgaa
ggtgaggatgcttccgaggatatggatttggagattgaggaagaagatgatgatgttgtt
ggacctaaaagtcggaaagtgagtgggagcaaggtggtggcgaggaagaggaaaactcct
gaaggggagaagttaactccgagttcgagcaagaagagcaagcctgttgcagatacgagt
gctgatagcaaaatgcactctgctgtgattggagtaaatggaaaagagtctgtggcgacc
aatgaagattgtgccaaggtatccaacaatgacaatgtattgctgtgtggtgcagcagat
agatttggacaacgtgaaacacagaaattcccattccttgggaaagatagaaaggatgca
aatagaaggtccccaggcgacgccaattatgatccaaggactatctacctacctcctaat
ttcttaaaaggtttaactggtggtcagagacaatggtgggagttcaagtcgaagcacatg
gataaagttctgttttttaagatgggaaaattctatgagctttatgagatggatgcacac
gttggagcccaggaacttcatctgcagtatatgaagggagagcaaccacattgtggattt
ccagaaaagaacttctcaatgaatgtagagaagttggctcggaagggttatagggttctt
gtggttgagcaaacagagacacctgaacagcttgagaatcgtagaagagagatgggatct
aaagataaggttgtcagacgtgaaatatgtgcagtagtcactaaaggaacattaactgag
ggagaaatgcttgcggcaaaccctgatgcttcatatttgatggcagtgactgaaagctct
ctaactgctgcattccaacaggggaagcgtacttatggtgtctgtatggttgatattagc
acgggcaagattattattggacagtttgaggatgattcagattgtagtgcgttgtgttgt
ctactttctgagttaagaccggtggaaataataaagcctgctaaattgcttagtcatgag
accgagagagtgctgatgcggcacacacgaaatccgctagtgaatgagttggttcctctt
tctgaattttgggatgctgagagaacaatttgtgaggtgaagggagtatataggaacatg
agcttgtcactgctagcatcatctccaaatgaaatgtcaacacatgaaagcactgcctct
gaggaagatggtgaaaggaactttctaccagatgttttatgtgagcttataaatcttggt
gggaacgggagttatgcactctcagcacttggaggagtgctatactacttgaagcaagct
tttctggatgaatccctgctcaaatttgcaaaatttgagctacttcccctttctggtttt
tgtgatggtactcagaaatggaatatggttcttgatgcagctgcactggagaatcttgag
atatttgagaacagtcgaaatggagattcttcagggacattatacgctcaaatcaaccac
tgtatcacagcatttgggaaaaggatgctcagatcatggcttgcaagacccttgtatcgt
ccagaatccattagagaacgtcaggatgctgtagccggattaaaggggatcaatctacct
tctgttcttgagtttagaaaggagttatcaaggcttcctgatatggagcggttgcttgca
cgcctcttcggtagcagtgaagccaatggaagaaatgcaaataaagtgactttatacgag
gatgcagcaaagaaacaactgcaagagttcatatcagctttacgtggatgtgaatcaatg
gtgcatgcatgctcttcacttggggtgatcttgggaaacacagactcaaagctacttcat
catctattaacacttggcaatggtcttccagatgtagattcagttctcaagcatttcaag
gatgcttttgattgggtggaagcaaataactcaggtcgtattatacctcatgaaggggtt
gatgaggagtatgatgctgcatgtaaacaagttcaggaggttgaacttaaattatccaag
cacttaaaggaacagaggaaactgcttggagactcatcaatagattacgtgacaatagga
aaagatgcatatcttttggaagtaccagaaagtttgtgcaggagcattccaaaggagtat
gaattacagtcatcgaaaaagggttatttcaggtactggaatccagtcttaaagaaatta
attggagagctttcacatgctgattcagagaaggaatctaagctaaaaagcattttgcgg
aggttgataggacggttttgtgaacatcataataagtggagagaattagttagtattact
gcagaattggatgttttaatcagtttgtcaattgcaagtgattactatgagggaccaaca
tgtcgtccaaacatcaagtcggtgccaagtcaagatgacgtgccagttcttctcgctgaa
aatttaggacatcctgttcttagaagcgattctctagataagggaacctttgtttccaac
aatgtttcccttggcggtcctccaaatgccagctttatccttctcactggtcctaacatg
ggagggaaatcaactcttttgcgccaagtctgcatggctgtaattttggcccaggtagga
gctgatgtaccagcatcatcatttgacatatcacctgttgatcgtatatttgtaagaatg
ggcgccaaagatcatattatggcaggccagagtacattcttgacagaactcttggaaact
gcttcaatgctgtctatggcaagccgtaattcactcgtcgcgcttgatgaacttggccgt
ggtacagctacttctgatggacaagcaatagctgaatcagttctcgaacactttgtccac
aaggtgcaatgtcgaggaatgttttctacccactatcatcggttatctattgactatcaa
aaagactccagggtgtcgctgtgccatatggcatgccaaattggaaaaggttccggaggt
cttgaggaagttacttttctttacaggttgacaccaggtgcatgtcctaaaagttatggt
gtcaatgttgcacggcttgctggacttcctgaaaatgtgcttcagagagctgctgcaaaa
tctgaggcgcttgagacttatggccacaataagcaatctgaagaaaacccttctgagaat
ttgacaggaaagactgcagcactgctccaaaatttgataaatttgatcgtacacaataaa
tatgacgacaacaagggtgtgattcttggtgagttgaatggactgcagaacagagcaaga
atagtccttgaacaaaattga
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