Solanum stenotomum: 125853493
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Entry
125853493 CDS
T08385
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125853493
09123 Folding, sorting and degradation
03018 RNA degradation
125853493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125853493
03041 Spliceosome [BR:
sstn03041
]
125853493
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125853493
mRNA cycle factors
Stress granule specific factors
125853493
Spliceosome [BR:
sstn03041
]
Complex C
Other components
Complex C specific factors
125853493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
RRM_MARF1
SNaCT12
PABC_AtC3H46
FANCI_S4
Motif
Other DBs
NCBI-GeneID:
125853493
NCBI-ProteinID:
XP_049389146
LinkDB
All DBs
Position
1:complement(3851731..3860000)
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AA seq
643 aa
AA seq
DB search
MAQVQVQPQGANAGGVNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTTQR
SLGYGYVNYGNPQDAARALEVLNFTPLSGKPIRIMYSNRDPTVRRSGTANIFIKNLDKAI
DHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDGEDAAQKAIEKLNGMLLNDKQVY
VGPFVRKQERDSAVDKTRFTNVFVKNLSEATLEEDLKKAFGEFGAITSIAIMKDEDGKSR
SFGFINFENAEDAARAVEALNGHKFDNKEWFVGRAQKKSEREMELKNRYEQSAKEAVDKS
QGLNLYIKNLDDSISDDKLKEMFSTYGTITSCKVMRDPSGVSKGSGFVAFSSPEEASRAL
AEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPIGMASTVAPRMPMYPPGGPGLGQ
QIFYGQPQPAMLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAV
PLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPDVGFPGVGGGMFSVPYDMGGMPVRDAGI
AQPIPVGALATALANASPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLL
ESPEALKAKVAEAMDVLRNVPQQQASNAADQLASLSLNDGLVS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggttcaggtgcagccacagggtgcgaatgctggtggtgtgaaccagtttgtg
acgtctctgtacgtgggtgaccttgatgtcaatgtgaccgattcacagctgtatgatcta
ttcaatcagctaggacaagttgtttcggttagggtttgcagggatttgactacccagagg
tcgctcggttatggttatgtcaattatgggaacccgcaagatgctgcaagggctttggaa
gtgctaaactttactcctctcagtggaaagcccatcaggataatgtactcaaaccgggac
ccaactgttcgaagaagtggcactgcaaacatatttattaagaatttggacaaggcaatt
gaccacaaagcactacatgatacattttctgcatttggaaatatcctgtcttgtaaggta
gctgtggattcatcaggtcagtccaaggggtatgggtttgtgcagtatgacggtgaggat
gctgcccaaaaagctattgagaaactgaatggtatgctgctgaatgacaagcaagtatat
gttggacccttcgttcgtaagcaagaaagagatagcgctgtagataagacaagatttacc
aatgtctttgtgaaaaatttatctgaagcaacattagaagaagatctcaagaaagccttt
ggtgaatttggtgccattactagcattgcaattatgaaggatgaagatggaaaatctagg
tcctttggatttattaactttgaaaatgctgaagatgctgcgagagcagttgaagctttg
aatggtcacaaatttgataacaaagaatggtttgtaggaagagctcagaagaaatcagag
agggaaatggaattgaaaaatcgatatgagcaaagtgccaaggaggcagttgataaatca
caaggtttgaatctatacataaaaaatttagatgacagcattagtgatgacaagctcaag
gaaatgttctctacatatggcacaatcacttcatgcaaggttatgagagatcctagtgga
gtaagcaaaggatcaggatttgttgcattctcatctcccgaagaggcttcaagagcgctt
gcagagatgaatggaaagatgattgttagcaaacctctgtatgttgcccttgcgcaacgc
aaggaagagagaagagcaaggttacaggctcagttttctcagatgcgtccaattggaatg
gcatctacagttgcacctagaatgcctatgtatcctcctggcggtcctggtctaggtcaa
caaatattctacggccagccacaaccagccatgcttcccccacaagctggttttggatat
cagcagcaacttgtacctggaatgaggcctggtggggggcctatgccgaatttctttatg
cccatggttcagcaagggcagcaaggtcaacgtccgggtggccgacgtggaggtgctgtt
ccattgcagcaaggacagcagccagttccgctgatgcagcaacagatgtttccgaggggg
cgtggatatcgatatcctccaggacgtggccttcctgatgttggctttccaggagtaggt
ggtggcatgttctctgtcccatatgatatgggtggcatgcctgtgcgtgatgcaggaatt
gcccaaccaattccggtaggggctttggctactgctctggctaatgcttctccaacagag
caaaggacgatgctaggtgaaaatctgtaccccttggtcgaacagcttgaaccagaaaca
gcagcgaaggtaactggcatgcttttggagatggaccagacagaggtattgcacttgctt
gagtctcctgaggctctgaaagccaaggttgcagaggcgatggacgttctgaggaatgtt
cctcagcagcaggccagtaatgctgctgatcagttggcttcattgtcactgaatgatggt
ctggtttcttga
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integrated database retrieval system
