Solanum stenotomum: 125853722
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Entry
125853722 CDS
T08385
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125853722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125853722
03036 Chromosome and associated proteins [BR:
sstn03036
]
125853722
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
125853722
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
125853722
RSF complex
125853722
WICH complex
125853722
B-WICH complex
125853722
NORC complex
125853722
BRF complex
125853722
NuRF complex (fruit fly)
125853722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
Myb_DNA-binding
DEAD
HDA2-3
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
125853722
NCBI-ProteinID:
XP_049389415
LinkDB
All DBs
Position
1:complement(54028445..54040927)
Genome browser
AA seq
1064 aa
AA seq
DB search
MARNTRAKSSSAEPLSDGSEEEQVNDQVNDEEDEEELEAVARSAEDDGDDEAVADREDGD
DEDEEEDVAANEISKREKARLKDMQRRKKQKIQEMLDAQNAAVEADMSNKGKGRLKYLLE
QTELFAHFAKGDQSTSEKKTKGRGRHASKITEEEEDEEYLKEEDGGLSGNTRLLAQPSCI
QGKMRDYQLAGLNWMIRLYENGINGILADEMGLGKTLQTISLLAYLHEFRGITGPHMVVA
PKSTLGNWMNEIKRFCPIIRAVKFLGNPEERRYIREDLLVAGKFDVCVTSFEMAIKEKSA
LRRFNWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWALLNFLLP
EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGM
SQMQKNYYRALLQKDFEVVNSGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHL
IENAGKMVLLDKLLPKLKERGSRVLIFSQMTRLLDILEDYLMYRGHQYCRIDGNTGGEDR
DASIEAFNSPGSEKFAFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQ
KKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEM
VFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTADLYDFEDEKDEN
KADFKKIAGDNWIEPPRRERKRNYSESEYFKQTMRPSGPARPKEPRIPRMPQLHDFQFFN
TQRLSELYEKEVRFLMQAHQKNQLKDSIEVEEPEDMGDPLTAEEQEEKDKLLEEGFSTWS
RRDFNTFIRACEKYGRNDIESIAAEMEGKTEEEVERYANVFKERYKELNDYDRIIKNIER
GEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGN
WDELKAAFRTAPLFRFDWFVKSRTTQELARRCDTLIRLVERENQEFDERERQARKEKKLA
KNATPSKRAVARQAAKSPPTSKKRKQSSMDDYVSSAKRRSDGTT
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcgagaaacacgagagcgaaatcctcgtcggcggagccattatcggacggttcagag
gaggagcaagtcaacgatcaagtcaatgatgaggaagatgaggaggagcttgaagctgtc
gctaggtcagcagaagatgacggcgatgacgaagctgttgctgatagagaagacggtgat
gatgaagatgaggaggaagatgttgcagcaaatgaaatctccaagcgtgaaaaggcacgg
ttaaaagatatgcagaggcgtaagaagcaaaagatacaggaaatgttggatgcacagaat
gctgcagtagaagctgacatgagtaacaagggaaaggggcgtcttaagtatcttttggag
cagacagagttatttgcacattttgcaaaaggcgatcaatcgacttcagaaaagaagaca
aaaggaaggggccgtcatgcgtcaaagataaccgaagaggaagaagatgaggagtatctc
aaagaagaagatggtgggctgtccgggaatacacggctattggcacaaccctcttgtatt
cagggaaagatgagggattatcaacttgctggtttgaactggatgatacggctatacgag
aatggcataaatgggatacttgctgatgaaatgggtcttggtaagaccttacaaaccatc
tctttgctggcgtacctgcatgagtttagagggattaccggtcctcacatggttgttgcc
ccaaaatccacactaggcaattggatgaatgaaatcaaacgtttttgtcctatcatacgc
gctgtaaagttccttgggaaccctgaagaaaggagatacattcgagaggatttactagtt
gctgggaagtttgatgtgtgtgtcacaagttttgagatggctatcaaagagaagtctgct
ttacgacgctttaattggcgttacatcatcattgatgaggctcatagaatcaagaatgaa
aattctcttctttccaaaaccatgaggctctacagcactaattataggctgttgatcaca
gggacgccacttcagaataatcttcatgagctctgggcgcttctgaactttttgctgcca
gagatctttagctcggctgagacatttgatgagtggtttcaaatatctggtgagaatgac
cagcaggaggtggtccaacagcttcataaggtccttcgtccattccttcttaggagactg
aagtctgatgttgagaaaggtctgcctccaaagaaggaaacaattctcaaggttggtatg
tctcagatgcagaaaaactactatcgggctctgttgcagaaagattttgaggttgttaat
tctggaggagagcgcaagcgtcttcttaatatagcaatgcagctccgaaaatgttgtaat
catccatatcttttccaaggagctgagccaggacctccatatacaaccggagagcatctc
atagaaaatgctggcaaaatggttcttcttgataagttgcttcctaagctgaaggaacga
ggctcaagggttttaatattttcacagatgacacggctactggacatccttgaagactac
ctgatgtatcgaggtcaccagtattgtcggattgatggaaacactggtggagaagatcgt
gatgcttctattgaagcatttaacagtccagggagtgaaaaatttgctttcttattgtca
accagagctggtggtcttggtatcaatcttgctacagcagatattgttattctttatgac
agtgactggaatccacaggttgatttgcaggctcaggaccgtgcccataggattggacag
aagaaggaagtccaagtattccgtttctgcactgagtatacaattgaggagaaagtgatt
gaaagggcttataagaagctggcacttgatgcactggtcatccaacagggacgattggct
gagcaaaaaactgttaataaggatgagctgctgcagatggtgcggtttggtgctgaaatg
gttttcagttccaaagatagcactataacagatgaggatatcgatagaatcattgccaaa
ggagaagaggcaacagcagaacttgatgccaagatgaagaagtttacagaagatgctatc
aaatttaagatggatgatactgctgatttgtatgactttgaagatgagaaggatgaaaac
aaggcagatttcaagaaaattgctggtgacaattggatagaacctccaagaagggagaga
aagcgcaattactcggagtctgaatatttcaagcaaaccatgcgaccaagtggtcctgca
agacctaaagagcccaggattcctaggatgcctcagctgcatgactttcagttctttaat
acccagaggctaagtgagctgtacgagaaggaagttcgttttctcatgcaagctcatcag
aaaaatcaattaaaagatagtatagaagtggaagagcctgaagatatgggagatccttta
actgccgaggagcaggaagaaaaggacaaattattagaggaaggattttcaacatggagt
agaagagatttcaatacttttatcagggcatgtgagaagtatggtcggaatgacatagaa
agtattgctgctgaaatggaaggaaagacagaggaggaggttgaaagatacgcaaatgtt
ttcaaagaaagatacaaagagctaaatgattatgataggattataaagaatattgaaaga
ggagaggctagaatttcacgaaaagatgagatcatgaaagcaattgggaagaagttggac
cgctacaagaatccatggttggagttgaagattcagtatggtcagaacaaaggaaaattg
tataatgaggagtgtgatcgtttcatgatatgtatggttcacaagctcggctatggaaac
tgggatgagctgaaggctgcattccgaacggcacctttgtttcggtttgattggtttgtg
aagtctcggacaactcaagaacttgccagaagatgtgatacacttattcgtttggtggag
agggaaaaccaagagtttgatgagagggagagacaggcacgcaaagaaaagaaacttgca
aagaacgcgacaccatcaaagcgtgctgtggcaagacaggcagccaaaagccctcccacc
tcaaagaagcggaagcagtcatcaatggatgattatgtgagctcggccaagagaagaagt
gatggtacaacttag
DBGET
integrated database retrieval system
