Solanum stenotomum: 125854366
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Entry
125854366 CDS
T08385
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125854366
03015 mRNA surveillance pathway
125854366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125854366
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125854366
mRNA cycle factors
P-body specific factors
125854366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
125854366
NCBI-ProteinID:
XP_049389849
LinkDB
All DBs
Position
2:complement(25477381..25504735)
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AA seq
1197 aa
AA seq
DB search
MEHPEDECRVGVEHPEKHEDEEAVARHEEFKKSVEAKIALRQNNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRSVNLSKFVSEAVTAICDAKLRAADIQAAVLIC
SLLHRRYKDFSPSLVQGLVKIFFLGKAAEDVDVDRNARAMKKRSTLKLLLELYFVGVVDD
TGIFVNIVKDLTSVEHLKDRDATQTNLSLLASFARQGRYLLGLPLAGQDILEELFKALNV
TTDQKRFFRKAFQTYYDASVELLQSEHASLRQMEHENEKILSAKGELNEENASAYEKLRK
AYDQLYRGISGLAEALDMQPPVMPEDGHTTRVTSGEDASSPGGSKDSSVLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKLSEQAKGQEHSIDSTPDADETQTAAQETADAGAIQE
DRNDKGKDKDEKDKEKTKEKSKEKDKDEKDKEPDKEKAREKEAERKGEGDKEKAKGVEGT
NLDSLLQRLPGCVSRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVA
TLSTCMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPPGLVFSC
LKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHITL
VENAYYLCKPPERSARVSKIRPPLHQYIRKLLFSDLDKSSLEHVLRQLRKLPWSECEAYL
LKCFMKVHRGKYGQIHLIASLTACLSRYHDDFSVAVVDEVLEEIRVGLELNDYGMQQRRI
AHMRFLGELYNYELVDSSVIFDTLYLILVFGHGTSEQDVLDPPEDCFRIRMVITLLETCG
HYFDRGSSKRKLDRFLIHFQRYILNKGVLPLDIEFDLQDLFAELRPNMTRYASIEEVNAA
LVDLEEHERIVTSEKTNNEKHSETEKIPSRTTSGMSVNGQSLSNGIEENGLHEEIVETES
DSENGTIEHVAHDDDEETDDWNRDDRCDTEDESDEGDGPGSDEEDKVHVRSKVAEVDPLE
EAEFERELRALMQESLDSRKLELRGRPTLNMTIPMNVFEGPTKDHRGVEGESGDETLDEG
AGGSKEVPVKVLVKRGNKQQTKKMLIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDR
EEEELNGLGNQPPSWTQSSGSRVSQRGSTWDAPGRGSGSRHRYLHHSGGGLYYGRRR
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggaacatcctgaggatgaatgtcgtgttggagtggaacacccagagaaacatgaagat
gaggaagctgtggctcgtcatgaggaattcaaaaaatctgttgaggcaaagatagctctt
aggcagaataatctgaatccagaacgaccagacactggttttctaaggacattggattct
agtattaagcgcaatactgcagttattaaaaaactaaaacagattaatgaagagcagcga
gaaggtttgatggaagagttgcgcagtgtcaacttaagcaagtttgtaagtgaagcagtg
actgctatttgtgatgcaaagcttcgggctgcagacatacaagctgcagtgctgatctgt
tctttgcttcatcggcggtacaaggacttttcaccaagtctagttcaaggccttgtgaaa
atcttctttcttggaaaagctgcagaggatgtagacgtggacagaaatgcgagggctatg
aaaaagcgtagcactttaaaacttcttttggaactttactttgttggagttgttgacgat
actggcatctttgtgaacattgttaaggacctcacgagtgttgagcatttgaaggaccgt
gatgcaactcagactaatttgtcacttcttgctagctttgctcgacaaggaagatacctt
cttgggcttccattggctggccaagatattcttgaggagcttttcaaggcccttaatgtg
actactgatcagaaaaggttctttaggaaggcgttccaaacatattatgatgcgtctgta
gaacttcttcagtctgagcatgcttcacttcggcaaatggagcatgaaaatgaaaagatt
ttatctgccaaaggtgaactgaatgaggagaatgcttctgcatatgaaaaactgcggaaa
gcttatgaccagctgtatcgtggcatctcaggattggcagaagcacttgacatgcaacct
ccggtgatgcccgaggatggtcatacaaccagggtaacatcgggcgaagatgcatcatcc
cctggtggtagtaaagattcttctgtcctagaggccctgtgggatgatgaagatacaagg
gctttctatgaatgtctaccagatctcagagcatttgttccagctgtattgcttggagaa
gcagaaccaaagttgagtgaacaagcgaaagggcaagagcattcaattgattcaacacct
gatgcagatgaaactcagactgctgcacaagagactgcagatgctggagctatacaggag
gacagaaatgataaaggcaaggataaagatgagaaggataaagagaagaccaaggaaaaa
tcaaaagaaaaggataaagatgaaaaggataaagagcctgataaggaaaaagcaagagaa
aaggaagctgaaagaaaaggagaaggtgataaggagaaagcaaaaggtgttgaaggaact
aatctggatagtctacttcagcggctacctggttgtgttagccgtgatttgattgaccag
ttgacagtggagttttgctatctgaattccaagtccagtaggaaaaaacttgttagggca
ttgttcaatgtccccaggacatcactagagttgttgccatactactctcgcatggttgcc
actctgtcaacttgcatgaaggatgtttcttctatgcttttacagttgttggaagaggag
ttcaactttttgataaataagaaggatcaaatgaatatagaaacaaaaataaggaatatt
cgttttattggagagctctgcaaattccgaattgctccacctggccttgttttcagttgt
ctgaaggcttgtttagatgatttcagtcatcacaatattgatgttgcttgcaatcttctc
gagacatgtgggcgttttctctaccgatctcctgaaactacaatacgcatggcaaacatg
ttagaaatattgatgcgtctgaagaatgttaaaaatttggatcctcgccacatcacctta
gtggagaatgcatattacttatgcaagccaccagaaagatctgcacgagtgtctaaaatt
cggcctcctctgcatcagtacataagaaaattgctcttttcggatcttgacaagtcttca
ttagagcatgtgctcagacagcttcgtaagcttccttggagtgaatgtgaggcatacctt
ttgaagtgcttcatgaaagttcacaggggcaagtatggtcagattcatttgattgcatca
cttactgcttgtttaagccgctatcatgatgatttttctgttgccgttgttgatgaggtt
ctggaggagatcagggtgggattagaattgaatgactatgggatgcagcaaagacgtatt
gctcacatgcgtttcctaggggagttgtataactatgaacttgttgattcctctgtgata
tttgatacgctctatttgattctcgtttttggccatggaacgtcagagcaagatgtattg
gatcctcccgaggattgtttccgcatcaggatggttattacgctacttgaaacctgtgga
cactactttgatcgaggttcatcaaagcgaaaacttgatcggttcctaatacatttccag
agatacatactcaacaaaggtgtacttcccctggatatagagtttgacttacaggactta
tttgctgaattacgtcctaacatgacgagatatgcatcaattgaagaagtcaatgctgct
ttagttgaccttgaggaacatgagcgcatagttacatctgaaaaaaccaacaatgagaag
cactctgagaccgagaaaattcccagcagaactacctctggaatgtctgtaaatgggcaa
agcctttcaaatggcattgaggagaatggattgcatgaagagattgtggagactgaaagt
gattcagagaatggcaccattgagcatgtggctcatgatgatgatgaagagacagatgat
tggaatcgggatgataggtgtgacactgaggatgaatctgatgagggcgatggaccgggt
tctgatgaggaggataaagtacatgtcaggtcaaaggttgcagaggttgatcctctggag
gaagcagaatttgagagagagcttcgggctctgatgcaggaaagtttggattcaagaaaa
ttggaattacggggaaggcctacactaaacatgacaataccaatgaatgtctttgagggc
ccaaccaaggaccatcgcggggttgaaggggagagtggtgatgagacattggatgaaggg
gctggaggaagtaaggaggttccagtgaaggttctcgtgaagcgaggtaataagcaacag
acaaagaaaatgctcattcctcgtgattgctccctcattcagagcacaaaacagaaagaa
gcagctgaacttgaagaaaagcaagacatcaagaggctggttctggagtacaatgataga
gaggaggaagagctaaatgggttagggaaccagccaccaagctggactcaaagcagtggg
agtagggtttctcaaaggggcagcacatgggatgcacctggtaggggcagtggctcacgt
catcgctatctgcatcattcaggtggtggcctttattatggcaggagaagatga
DBGET
integrated database retrieval system
